Yang TH, Chiang YH, Shiue SC, Lin PH, Yang YC, Tu KC, Tseng YY, Tseng JT*, Wu WS. Cancer DEIso: An integrative analysis platform for investigating differentially expressed gene-level and isoform-level human cancer markers. Comput Struct Biotechnol J. 2021 Sep 8;19:5149-5159

Wu WS, Tsao YH, Shiue SC, Chen TY, Tseng YY, Tseng JT*. A tool for analyzing and visualizing ribo-seq data at the isoform level. BMC Bioinformatics. 2021 May 25;22(Suppl 10):271. 

Lin CC, Wu CY, Tseng JT, Hung CH, Wu SY, Huang YT, Chang WY, Su PL, Su WC. Extracellular Vesicle miR-200c Enhances Gefitinib Sensitivity in Heterogeneous EGFR-Mutant NSCLC. Biomedicines. 2021 Feb 28;9(3):243.

1. Huang WY, Chen DR, Kor CT, Chen TY, Lin PT, Tseng JTC, Wu HM. Relationships between Follicle-Stimulating Hormone and Adiponectin in Postmenopausal Women. Metabolites. 2020 Oct 19;10(10):420.

2. Lin YH, Hung SJ, Chen YL, Lin CH, Kung TF, Yeh YC, Tseng JT*, Liu T*. Dissecting efficiency of a 5' rapid amplification of cDNA ends (5'-RACE) approach for profiling T-cell receptor beta repertoire. PLoS One. 2020 Jul 23;15(7): e0236366. 

3. Chan YL, Lai WC, Chen JS, Tseng JT, Chuang PC, Jou J, Lee CT, Sun HS. TIAM2S Mediates Serotonin Homeostasis and Provokes a Pro-Inflammatory Immune Microenvironment Permissive for Colorectal Tumorigenesis. Cancers (Basel). 2020 Jul 8;12(7):1844. 

4. Zhang Y, Tseng JT, Lien IC, Li F, Wu W, Li H. mRNAsi Index: Machine Learning in Mining Lung Adenocarcinoma Stem Cell Biomarkers. Genes (Basel). 2020 Feb 27;11(3).

5. Wu WS, Jiang YX, Chang JW, Chu YH, Chiu YH, Tsao YH, Nordling TEM, Tseng YY, Tseng JT.* HRPDviewer: human ribosome profiling data viewer. Database (Oxford). 2018 Jul 11; 2018:bay074.

6. Kumar R, Chang CC, Ng TH, Ding JY, Tseng TC, Lo CF, Wang HC. (2018) Draft Genome Sequen of Vibrio parahaemolyticus Strain M1-1, Which Causes Acute Hepatopancreatic Necrosis Disease in Shrimp in Vietnam. Genome Announc. 18;6(3). 

7. Wu WS, Tu BW, Chen TT, Hou SW, Tseng JT. (2017) CSmiRTar: Condition-Specific microRNA targets database. PLoS One. 12(7):e0181231

8. Wu WS, Tu BW, Chen TT, Hou SW, Tseng JT. (2017) CSmiRTar: Condition-Specific microRNA targets database. PLoS One. 12(7):e0181231

9. Lin GL, Ting HJ, Tseng TC, Juang V, Lo YL. (2017) Modulation of the mRNA-binding protein HuR as a novel reversal mechanism of epirubicin-triggered multidrug resistance in colorectal cancer cells. PLoS One. 2017 12(10):e0185625. 

10. Tsai YC, Tseng JT, Wang CY, Su MT, Huang JY, Kuo PL. (2017) Medroxyprogesterone acetate drives M2 macrophage differentiation toward a phenotype of decidual macrophage. Mol Cell Endocrinol. 452:74-83.

11. Lai CH, Huang YC, Lee JC, Tseng JT, Chang KC, Chen YJ, Ding NJ, Huang PH, Chang WC, Lin BW, Chen RY, Wang YC, Lai YC, Hung LY. (2017) Translational upregulation of Aurora-A by hnRNP Q1 contributes to cell proliferation and tumorigenesis in colorectal cancer. Cell Death Dis. 8:e2555. 

12. Huang YC, Lee CT, Lee JC, Liu YW, Chen YJ, Tseng JT, Kang JW, Sheu BS, Lin BW, Hung LY. (2016) Epigenetic silencing of miR-137 contributes to early colorectal carcinogenesis by impaired Aurora-A inhibition. Oncotarget. 7:76852-76866. 

13. Chang CW, Lee WB, Chen-Deng A, Liu T, Tseng JT, Chang D. (2015) Light-RCV: a lightweight read coverage viewer for next generation sequencing data. BMC Bioinformatics. 16 Suppl 18:S11. 

14. Ko CY, Wang WL, Li CF, Jeng YM, Chu YY, Wang HY, Tseng JT, Wang JM. (2015) IL-18-induced interaction between IMP3 and HuR contributes to COX-2 mRNA stabilization in acute myeloid leukemia. J Leukoc Biol. 2015 99(1):131-41. 

15. Liang KC, Tseng JT, Tsai SJ, Sun HS. (2015) Characterization and distribution of repetitive elements in association with genes in the human genome. Comput Biol Chem. 57: 29-38. 

16. Chan CP, Tsai YT, Chen YL, Hsu YW, Tseng JT, Chuang HY, Shiurba R, Lee MH, Wang JY, Chang WC. (2015) Pb2+ induces gastrin gene expression by extracellular signal-regulated kinases 1/2 and transcription factor activator protein 1 in human gastric carcinoma cells. Environ Toxicol. 30(2):129-36. 

17. Lin BW, Wang YC, Chang-Liao PY, Lin YJ, Yang ST, Tsou JH, Chang KC, Liu YW, Tseng JT, Lee CT, Lee JC, Hung LY. (2014) Overexpression of Aurora-C interferes with the spindle checkpoint by promoting the degradation of Aurora-B. Cell Death Dis. 5:e1106. 

18. Chen TM, Shih YH, Tseng JT, Lai MC, Wu CH, Li YH, Tsai SJ, Sun HS. (2014) Overexpression of FGF9 in colon cancer cells is mediated by hypoxia-induced translational activation. Nucleic Acids Res. 42(5):2932-44. 

19. Yang YT, Chen IT, Lee CT, Chen CY, Lin SS, Hor LI, Tseng TC, Huang YT, Sritunyalucksana K, Thitamadee S, Wang HC, Lo CF. (2014) Draft Genome Sequences of Four Strains of Vibrio parahaemolyticus, Three of Which Cause Early Mortality Syndrome/Acute Hepatopancreatic Necrosis Disease in Shrimp in China and Thailand. Genome Announc. 4;2(5). pii: e00816-14. 

20. Hsiao YW, Li CF, Chi JY, Tseng JT, Chang Y, Hsu LJ, Lee CH, Chang TH, Wang SM, Wang DD, Cheng HC, Wang JM. (2013) CCAAT/enhancer binding protein δ in macrophages contributes to immunosuppression and inhibits phagocytosis in nasopharyngeal carcinoma. Sci Signal. 6(284):ra59. 

21. Cheng YC, Liou JP, Kuo CC, Lai WY, Shih KH, Chang CY, Pan WY, Tseng JT, Chang JY. (2013) MPT0B098: A Novel Microtubule Inhibitor that Destabilizes the HIF-1α mRNA through Decreasing Nuclear-cytoplasmic Translocation of RNA Binding Protein, HuR. Mol Cancer Ther. 2013 Jul;12(7):1202-12. 

22. Teng YN, Chang YP, Tseng JT, Kuo PH, Lee IW, Lee MS, Kuo PL. (2012) A single-nucleotide polymorphism of the DAZL gene promoter confers susceptibility to spermatogenic failure in the Taiwanese Han. Hum Reprod. 27, 2857-2865. 

23. Ko CY, Chang LH, Lee YC, Sterneck E, Cheng CP, Chen SH, Huang AM, Tseng JT, Wang JM.* (2012) CCAAT/enhancer binding protein delta (CEBPD) elevating PTX3 expression inhibits macrophage-mediated phagocytosis of dying neuron cells. Neurobiol Aging. 33, 422.e11 

24. Liao WL, Wang WC, Chang WC, Tseng JT.* (2011) The RNA-binding protein HuR stabilizes the cytosolic phospholipase A2a mRNA under interleukin-1b treatment in non-small cell lung cancer A549 cells. J Biol Chem. 286, 35499-35508. 

25. Nadar M, Chan MY, Huang SW, Huang CC, Tseng JT*, Tsai CH.* (2011) HuR binding to AU-rich elements present in the 3' untranslated region of Classical swine fever virus. Virol J. 8, 340. 

26. Wu SR, Li CF, Hung LY, Huang AM, Tseng JT, Tsou JH, Wang JM.* (2011) CCAAT/enhancer binding protein delta mediates TNFalpha-induced aurora kinase C transcription and promotes genomic instability. J Biol Chem. 286, 28662-28670. 

27. Liu ZM, Tseng JT, Hong DY, Huang HS.* (2011) Suppression of TG-interacting factor sensitizes arsenic trioxide-induced apoptosis in human hepatocellular carcinoma cells. Biochem J. 438, 349-358. 

28. Pao PC, Huang NK, Liu YW, Yeh SH, Lin ST, Hsieh CP, Huang AM, Huang HS, Tseng JT, Chang WC, Lee YC.* (2011) A novel RING finger protein, Znf179, modulates cell cycle exit and neuronal differentiation of P19 embryonal carcinoma cells. Cell Death Differ. 18, 1791-1804. 

29. Yeh SH, Yang WB, Gean PW, Hsu CY, Tseng JT, Su TP, Chang WC, Hung JJ.* (2011) Translational and transcriptional control of Sp1 against ischaemia through a hydrogen peroxide-activated internal ribosomal entry site pathway. Nucleic Acids Res. 39, 5412-5423. 

30. Chiou CH, Chien LJ, Chou TC, Lin JL, Tseng JT.* (2011) Rapid whole-cell sensing chip for low-level arsenite detection. Biosens Bioelectron. 26, 2484-2488. 

31. Pan YC, Li CF, Ko CY, Pan MH, Chen PJ, Tseng JT, Wu WC, Chang WC, Huang AM, Sterneck E, Wang JM.* (2010) CEBPD Reverses RB/E2F1-Mediated Gene Repression and Participates in HMDB-Induced Apoptosis of Cancer Cells. Clin Cancer Res. 16, 5770-5780. 

32. Hsu CC, Kuo PH, Lee IW, Su MT, Tseng JT, Kuo PL.* (2010) Quantitative trait analysis suggests human DAZL may be involved in regulating sperm counts and motility. Reprod Biomed Online. 21, 77-83. 

33. Chiou CS, Li HY, Tung SK, Chen CY, Teng CH, Shu JC, Tseng JT, Hsu CY, Chen CC.* (2010) Identification of prophage gene z2389 in Escherichia coli EDL933 encoding a DNA cytosine methyltransferase for full protection of NotI sites. Int J Med Microbiol. 300, 296-303. 

34. Lin LF, Chuang CH, Li CF, Liao CC, Cheng CP, Cheng TL, Shen MR, Tseng JT, Chang WC, Lee WH, Wang JM.* (2010) ZBRK1 acts as a metastatic suppressor by directly regulating MMP9 in cervical cancer. Cancer Res. 70, 192-201.

35. Lai CH,# Tseng JT#, Lee YC, Chen YJ, Lee JC, Huang TC, Liu YW, Leu TH, Liu YW, Chen YP, Chang WC, Hung LY. (2010) Translational up-regulation of Aurora-A in EGFR overexpressed cancer. J. Cell. Mol. Med. 14, 1520-1531.(#: equal contribution) 

36. Wang SW, Chen CY, Tseng JT, Liang SH, Chen SC, Hsieh C, Chen YH, and Chen CC.* (2009) Orf4 in sigB cluster induced by general stress functions as a Dps-like bacterioferritin in Bacillus cereus ATCC14579. J. Bacteriology, 191, 4522-4533  

37. Yeh CH, Hsu H, Hung LY, Le SY, Lee PT, Liao WL, Lin YT, Chang WC, and Tseng JT.* (2008) RNA-binding protein HuR interacts with thrombomodulin 5’UTR and represses IRES-mediated translation under IL-1b treatment. Mol. Biol. Cell, 19, 3812-3822 

38. Hung LY, Tseng JT, Lee YC, Xia W, Wang YN, Wu ML, Chuang YH, Lai CH, Chang WC.* (2008) Nuclear epidermal growth factor receptor (EGFR) interacts with signal transducer and activator of transcription 5 (STAT5) in activating Aurora-A gene expression. Nucleic Acids Res., 36, 4337-4351. 

39. Tsou JH, Chang KY, Wang WC, Tseng JT, Su WC, Hung LY, Chang WC, Chen BK.* (2008) Nucleolin regulates c-Jun/Sp1-dependent transcriptional activation of cPLA2{alpha} in phorbol ester-treated non-small cell lung cancer A549 cells. Nucleic Acids Res., 36, 217-227.

40. Lee PT, Liao PC, Chang WC, and Tseng JT.* (2007) EGF increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol. Bio. Cell, 18, 5004-5013.

41. Wang JM, Tseng JT, and Chang WC.* (2005) Induction of the human NF-IL6b by epidermal growth factor is mediated through p38 signaling pathway and CREB activation. Mol. Bio. Cell, 16, 3365-3376. 

42. Tseng TC, Marfatia SM, Bryant PJ, Pack S, Zhung Z, O’Brien JE, Lin L, Hanada T, and Chishti AH.* (2001) VAM-1: a new member of the MAGUK family binds to human Veli-1 through a conserved domain. Biochimica Biophysica Acta, 1518, 249-259.

43. Hu HM, Chung CK, Lee MJ, Tseng TC, and Tang TK.* (2000) Genomic organization, expression, and chromosome localization of a third Aurora-related kinase gene, Aie1. DNA and Cell Biology, 19, 679-688. 

44. Tseng TC, Chen SH, Hsu YPP, and Tang TK.* (1998) A protein kinase profile of sperms and eggs: cloning and characterization of two novel testis specific protein kinase (AIE1, AIE2) related to yeast and fly chromosome segregation regulators. DNA and Cell Biology, 17, 823-833. 

45. Tseng TC, Tsai TH, Lue MY, and Lee HT.* (1995) Identification of sucrose- regulated genes in cultured rice cells using mRNA differential display. GENE, 161, 179-182. 

Hung LY, Lai CH, Tseng TC, Lee JC, Lin BW. SHORT INTERFERING RNA FOR TREATING CANCER (2019) Unite States (USA) Patent No. US 10174322 B2 2019/1/8-2036/02/23

曾大千；林祐宏；蔡松霖；林偉盟；洪晨瑋；江淑華 (2021) 核苷酸多型性親緣鑑定方法 台灣發明專利I747158 號
專利期限: 2021/11/21-2040/02/11 

洪良宜；曾大千；賴謙賢；李政昌；林博文 (2017) 用以治療癌症之短干擾核糖核酸分子中華民國 發明第I585204號
專利期限: 2017/06/01-2036/02/23