These demos contain examples of new workflows and views in JBrowse 2, with linksto live sessions on the web in order for you to be able to experience the appyourself. The link above will always direct to the most recent demo that hasbeen released.
You can choose a different organism from the drop-down menu on the upper left corner of the annotator panel. Please be aware you have access to the following organisms: Honeybee, Human-hg38, Yeast, and Volvox Fictious (the JBrowse demonstration sample organism). Choosing any of the other available options will show an error warning alerting you that you do not have sufficient permissions to perform the operation. Should you encounter this error, simply return to one of the organisms listed above.
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With the help of the wonderful workshop team at DAMTP (University of Cambridge), we recreated the mechanical swimmers used by G. I. Taylor in his famous demonstration of the difference between high and low Reynolds number swimming (more details on the original swimmers below).
Every two years, the Department of Applied Maths and Theoretical Physics organises a lab open day during the Science Festival of the University of Cambridge. For each of them, I contributed demonstrations with micro-organisms.
In 2013, we designed with Dr. Kirsty Wan (middle photo, left) a dark chamber to observe the luminescent bacterium Photobacterium phosphoreum glowing, and discover the role of oxygen in luminescence. We also painted these bacteria on agar plates (top picture), and demonstrated phototaxis (the behavior of chasing light) in Chlamydomonas reihnardtii, a single-celled microalga.
In 2015, we set up a microscope above a small puddle of Volvox globator, a swimming colonial alga of around 1 mm diameter, to demonstrate their phototaxis live, by having them run from one end of the field of view to the opposite end when switching light position (bottom photo).
In 2017, I improved the design of this last demonstration set-up, by installing 4 LEDs, one on each side of a square arena, which could be activated by kids with a remote control, allowing them to choose the light signal they wanted to impose. To see Volvox in action, check the video: play video be457b7860
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