Whim database for domestic cat (Felis Catus) physiology
Contents will be updated on a whim !
F.catlas opened (2023 / 10 / 30)
Transcriptome data were started to be released (2023 / 11 / 29)
F.catlas is released publicly (2024 / 1 / 17)
Transcriptome data mapped to AnAms1.0 is partially released (2024 / 1 / 30)
Start Recalculations for some samples (2024 / 2 / 12)
2. Gene expression count data from 4 tissues (brain liver, muscle, testis) of the cat
Fca126_mat1.0_PRJEB33381_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 22) AnAms1_0_PRJEB33381_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 18)( Processed from data in BioProject PRJEB33381 (Accession ERP116168) estimated by Method (RNA-seq) in the bellow. 12 runs.)
3. Gene expression count data from 3 tissues (brain liver, kidny) of the cat
Fca126_mat1.0_PRJNA184055_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA184055_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 18)( Processed from data in BioProject PRJNA184055 (Accession SRP017611) estimated by Method (RNA-seq) in the bellow. 9 runs.)
4. Gene expression count data from 13 tissues of the cat
Fca126_mat1.0_PRJNA882763_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 3 / 8) AnAms1_0_PRJNA882763_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 22)( Processed from data in BioProject PRJNA882763 (Accession SRP398402) estimated by Method (RNA-seq) in the bellow. 77 runs.)
5. Gene expression count data from 27 tissues of the cat
Fca126_mat1.0_PRJNA312519_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 3 / 15) AnAms1_0_PRJNA312519_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 3 / 3)( Processed from data in BioProject PRJNA312519 (Accession SRP071078) estimated by Method (RNA-seq) in the bellow. 32 runs.)
6. Gene expression count data from testis of cats
Fca126_mat1.0_PRJNA281478_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2023 / 12 / 18) AnAms1_0_PRJNA281478_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA281478 (Accession SRP115024) estimated by Method (RNA-seq) in the bellow. 15 runs.)
7. Gene expression count data from tooth of cats
Fca126_mat1.0_PRJEB24183_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 20) AnAms1_0_PRJEB24183_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 12)( Processed from data in BioProject PRJEB24183 (Accession ERP105992) estimated by Method (RNA-seq) in the bellow. 28 runs.)
8. Gene expression count data from liver of cats
Fca126_mat1.0_PRJEB13074_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2023 / 12 / 21) AnAms1_0_PRJEB13074_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 18)( Processed from data in BioProject PRJEB13074 (Accession ERP014610) estimated by Method (RNA-seq) in the bellow. 2 runs.)
9. Gene expression count data from tissues of FIPV infected cats
Fca126_mat1.0_PRJNA342639_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA342639_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 18)( Processed from data in BioProject PRJNA342639 (Accession SRP090125) estimated by Method (RNA-seq) in the bellow. 35 runs.)
10. Gene expression count data from subcutaneous adipose of cats
Fca126_mat1.0_PRJNA200316_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2023 / 12 / 25) AnAms1_0_PRJNA200316_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA200316 (Accession SRP021539) estimated by Method (RNA-seq) in the bellow. 20 runs.)
11. Gene expression count data from cerebral cortex of cats
Fca126_mat1.0_PRJNA495843_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA495843_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 18)( Processed from data in BioProject PRJNA495843 (Accession SRP166432) estimated by Method (RNA-seq) in the bellow. 16 runs.)
12. Gene expression count data from ovarian follicles of cats
Fca126_mat1.0_PRJNA635095_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA635095_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 2 / 13)( Processed from data in BioProject PRJNA635095 (Accession SRP264864) estimated by Method (RNA-seq) in the bellow. 9 runs.)
13. Gene expression count data from sarcoma of cats (American shorthair)
Fca126_mat1.0_PRJNA437171_gene_exp_mat_by_FeatureCounts.csv (F.catus_Fca126_mat1.0) (2022 / 3 / 16) AnAms1_0_PRJNA437171_gene_exp_mat_by_FeatureCounts.csv (AnAms1.0) (2024 / 3 / 5)( Processed from data in BioProject PRJNA437171 (Accession SRP134052) estimated by Method (RNA-seq) in the bellow. 14 runs.)
14. Gene expression count data from prepubertal ovarian of cats
Fca126_mat1.0_PRJNA662384_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2022 / 2 / 25) AnAms1_0_PRJNA662384_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 13)( Processed from data in BioProject PRJNA662384 (Accession SRP281644) estimated by Method (RNA-seq) in the bellow. 24 runs.)
15. Gene expression count data from toxoplasma infected small intestine of cats
Fca126_mat1.0__gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 28) AnAms1_0__gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA658401, PRJNA658398, PRJNA658399, PRJNA658394, (Accession SRP279126, SRP279135, SRP279287, SRP279508, ) estimated by Method (RNA-seq) in the bellow. 12 runs.)
16. Gene expression count data from uterine endometrium of cats
Fca126_mat1.0_PRJNA674672_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 28) AnAms1_0_PRJNA674672_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA674672 (Accession SRP291214 ) estimated by Method (RNA-seq) in the bellow. 3 runs.)
17. Gene expression count data from testicular tissue of cats
Fca126_mat1.0_PRJNA741252_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA741252_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 14)( Processed from data in BioProject PRJNA741252 (Accession SRP326406 ) estimated by Method (RNA-seq) in the bellow. 20 runs.)
18. Gene expression count data from embryo tooth of cats
Fca126_mat1.0_PRJNA643853_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA643853_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 13)( Processed from data in BioProject PRJNA643853 (Accession SRP271114 ) estimated by Method (RNA-seq) in the bellow. 9 runs.)
19. Gene expression count data from gingiva and oral mucosa of cats
Fca126_mat1.0_PRJNA961207_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 14) AnAms1_0_PRJNA961207_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 1)( Processed from data in BioProject PRJNA961207 (Accession SRP434237 ) estimated by Method (RNA-seq) in the bellow. 29 runs.)
20. Gene expression count data from SARS CoV 2 infected lung of cats
Fca126_mat1.0_PRJNA842733_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA842733_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 16)( Processed from data in BioProject PRJNA842733 (Accession SRP377804 ) estimated by Method (RNA-seq) in the bellow. 30 runs.)
21. Gene expression count data from cornea of cats
Fca126_mat1.0_PRJNA967702_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 1 / 14) AnAms1_0_PRJNA967702_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA967702 (Accession SRP436158 ) estimated by Method (RNA-seq) in the bellow. 25 runs.)
22. Gene expression count data from skeletal muscle of cats
Fca126_mat1.0_PRJNA759257_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 1 / 24) AnAms1_0_PRJNA759257_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA759257 (Accession SRP335065 ) estimated by Method (RNA-seq) in the bellow. 216 runs.)
23. Gene expression count data from adipose obesity of cats
Fca126_mat1.0_PRJNA940803_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 1 / 26) AnAms1_0_PRJNA940803_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 4)( Processed from data in BioProject PRJNA940803 (Accession SRP427815 ) estimated by Method (RNA-seq) in the bellow. 48 runs.)
24. Gene expression count data from 7 tissues of cats
Fca126_mat1.0_PRJNA637678_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 30) AnAms1_0_PRJNA637678_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 30)( Processed from data in BioProject PRJNA637678 (Accession SRP266207 ) estimated by Method (RNA-seq) in the bellow. 20 runs.)
1. Gene expression count data from feline adipose-derived MSCs cultured cells
Fca126_mat1.0_PRJNA374021_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 19) AnAms1_0_PRJNA374021_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 3)( Processed from data in BioProject PRJNA374021 (Accession SRP099203) estimated by Method (RNA-seq) in the bellow. 3 runs.)
2. Gene expression count data from feline immunodeficiency virus (FIV) infected cells
Fca126_mat1.0_PRJEB4969_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 19) AnAms1_0_PRJEB4969_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJEB4969 (Accession ERP004311) estimated by Method (RNA-seq) in the bellow. 8 runs.)
3. Gene expression count data from feline alphaherpesvirus (FHV) infected cells
Fca126_mat1.0_PRJNA432069_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 19) AnAms1_0_PRJNA432069_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA432069 (Accession SRP131692) estimated by Method (RNA-seq) in the bellow. 12 runs.)
4. Gene expression count data from feline optic nerve cells
Fca126_mat1.0_PRJNA432566_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 15) AnAms1_0_PRJNA432566_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 4)( Processed from data in BioProject PRJNA432566 (Accession SRP131998) estimated by Method (RNA-seq) in the bellow. 16 runs.)
5. Gene expression count data from CPV infected CRFK cells
Fca126_mat1.0_PRJNA513333_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA513333_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 13)( Processed from data in BioProject PRJNA513333 (Accession SRP176454) estimated by Method (RNA-seq) in the bellow. 4 runs.)
6. Gene expression count data from skin fibroblast cells
Fca126_mat1.0_PRJNA564062_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 21) AnAms1_0_PRJNA564062_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA564062 (Accession SRP220458) estimated by Method (RNA-seq) in the bellow. 3 runs.)
7. Gene expression count data from germ cells
Fca126_mat1.0_PRJNA604128_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 22) AnAms1_0_PRJNA604128_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 13)( Processed from data in BioProject PRJNA604128 (Accession SRP246312) estimated by Method (RNA-seq) in the bellow. 6 runs.)
8. Gene expression count data from FIPV infected lymph node cells
Fca126_mat1.0_PRJNA640049_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 25) AnAms1_0_PRJNA640049_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA640049 (Accession SRP267660) estimated by Method (RNA-seq) in the bellow. 24 runs.)
9. Gene expression count data from feline corona virus infected blood and kidney cells
Fca126_mat1.0_PRJNA668739_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2023 / 12 / 25) AnAms1_0_PRJNA668739_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 14)( Processed from data in BioProject PRJNA668739 (Accession SRP287103) estimated by Method (RNA-seq) in the bellow. 23 runs.)
10. Gene expression count data from FeLV infected blood and fibroblast cells
Fca126_mat1.0_PRJNA924061_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 9) AnAms1_0_PRJNA924061_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 25)( Processed from data in BioProject PRJNA924061 (Accession SRP417571) estimated by Method (RNA-seq) in the bellow. 14 runs.)
11. Gene expression count data from 3 types of adopose cells
Fca126_mat1.0_PRJNA882213_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA882213_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 16)( Processed from data in BioProject PRJNA882213 (Accession SRP398585) estimated by Method (RNA-seq) in the bellow. 9 runs.)
12. Gene expression count data from FeLV infected blood and fibroblast cells
Fca126_mat1.0_PRJNA750528_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA750528_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 16)( Processed from data in BioProject PRJNA750528 (Accession SRP330694) estimated by Method (RNA-seq) in the bellow. 10 runs.)
13. Gene expression count data from blood of cats (American shorthair)
Fca126_mat1.0_PRJNA721786_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA721786_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 25)( Processed from data in BioProject PRJNA721786 (Accession SRP315061) estimated by Method (RNA-seq) in the bellow. 4 runs.)
14. Gene expression count data from SARS CoV 2 infected CD4 and 8 cells
Fca126_mat1.0_PRJNA942620_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 25) AnAms1_0_PRJNA942620_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 25)( Processed from data in BioProject PRJNA942620 (Accession SRP426409) estimated by Method (RNA-seq) in the bellow. 28 runs.)
15. Gene expression count data from ear skin fibroblast cells (British Shorthair)
Fca126_mat1.0_PRJNA704985_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 4) AnAms1_0_PRJNA704985_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 4)( Processed from data in BioProject PRJNA704985 (Accession SRP308265) estimated by Method (RNA-seq) in the bellow. 2 runs.)
16. Gene expression count data from FCGS cells
Fca126_mat1.0_PRJNA630430_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 2 / 12) AnAms1_0_PRJNA630430_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 2 / 19)( Processed from data in BioProject PRJNA630430 (Accession SRP260071) estimated by Method (RNA-seq) in the bellow. 2 runs.)
17. Gene expression count data from ovarian_granulosa_cell
Fca126_mat1.0_PRJNA655621_gene_exp_mat_by_FeatureCounts.xlsx (F.catus_Fca126_mat1.0) (2024 / 3 / 27) AnAms1_0_PRJNA655621_gene_exp_mat_by_FeatureCounts.xlsx (AnAms1.0) (2024 / 3 / 27)( Processed from data in BioProject PRJNA655621 (Accession SRP276351) estimated by Method (RNA-seq) in the bellow. 6 runs.)