CS472 Data science and AI for COVID-19

Description

This project class investigates and models COVID-19 using tools from data science and machine learning. We will introduce the relevant background for the biology and epidemiology of the COVID-19 virus. Then we will critically examine current models that are used to predict infection rates in the population as well as models used to support various public health interventions (e.g. herd immunity and social distancing). The core of this class will be projects aimed to create tools that can assist in the ongoing global health efforts. Potential projects include data visualization and education platforms, improved modeling and predictions, social network and NLP analysis of the propagation of COVID-19 information, and tools to facilitate good health behavior, etc. The class is aimed toward students with experience in data science and AI, and will include guest lectures by biomedical experts.

Course Format

  • Class participation (20%)

  • Course project (80%)

Prerequisites

  • Background in machine learning and statistics (CS229, STATS216 or equivalent).

  • Some biological background is helpful but not required.

Staff

For all course and project related questions, please send to cs472.staff@gmail.com

Prof. James Zou (jamesz at stanford)

TA: Irena Fischer-Hwang (ihwang at stanford)

TA: Weixin (Victor) Liang (wxliang at stanford)

TA: Zhenqin (Michael) Wu (zqwu at stanford)

TA: Jaime Roquero Gimenez (roquero at stanford)

Syllabus (tentative)

Date Lecture Readings/notes

April 10 Overview of COVID-19 and health systems during pandemic [video, Prof. Zou's slides] guest: Nigam Shah

April 17 ICU operations, surveys, epidemiological models [video, Prof. Zou's slides] guests: Kari Kirsch, Eleni Linos [slides]

April 24 Global response and policies for COVID-19 [video] guests: Michele Barry [slides], Steven Goodman [slides]

May 1 Project proposals

May 8 ML for COVID-19 drugs [video] guest: Russ Altman [slides]

May 15 NLP analysis COVID-19 information on Twitter and FB [video] guest: Johannes Eichstaedt

May 22 COVID-19 antibody testing and genome editing guest: Shalin Mehta [slides], Stanley Qi [slides]

May 29 COVID-19 genomic analysis guest: Julia Palacios

June 5 Final demos