Research

Table of Contents

• Workflows
• Datasets
• Training Content

0. Tools

• NeuroVM - A pre-built virtual machine for neuro research
• SimAgent - Easily submit NEURON simulations to supercomputers like NSG
• BMTools - A collection of scripts to make developing networks in BMTK easier.

1. Introduction

• Introduction
• Automation Tools

2. Neuroscience

• Basics
• Short-Term Synaptic Plasticity [repo]

3. NEURON

• Installation
• MOD Files
  • Channels, Pumps, Diffusion
  • Artificial Spiking Cells

4. BMTK Tutorials

• Installing BMTK
• Single Cell HOC BMTK
• Networked HOC BMTK
• Simple Data Manipulation
• Advanced BMTK

5. Binder

• Using Binder

6. Single Cell

• Building a cell

7. Automation Techniques

• APIs

Reference Cards

• Useful Equations

Contributing to this project

• Using Git
• Website Structure