For an updated list of publications, look at the google scholar page here 

Peer Reviewed Journals:

1. Dominique C. Stephens, Amber Crabtree, Heather K. Beasley, Edgar Garza-Lopez, Margaret Mungai, Larry Vang, Kit Neikirk, Zer Vue, Neng Vue, Andrea G. Marshall, Kyrin Turner, Jian-qiang Shao, Bishnu Sarker, Sandra Murray, Jennifer A. Gaddy, Antentor O. Hinton Jr1, Steven Damo, Jamaine Davis. In the Age of Machine Learning Cryo-EM Research is Still Necessary: A path toward precision medicine. Advanced Biology, 2023. (accepted) 

2. Sarker, Bishnu, Navya Khare, Marie-Dominique Devignes, and Sabeur Aridhi. "Improving automatic GO annotation with semantic similarity." BMC Bioinformatics 23, no. 2 (2022): 1-19.

3. Bishnu Sarker, Ritchie DW, Aridhi S.  GrAPFI: Predicting Enzymatic Function of Proteins from Domain Similarity Graphs. BMC Bioinformatics. 2020;21:1

4. Belhouachi N, Xochelli A, Boudjoghra M, Lesty C, Cassoux N, Fardeau C, Tran TH, Choquet S, Bishnu Sarker, Houillier C, Alentorn A. Primary Vitreoretinal Lymphomas Display a Remarkably Restricted Immunoglobulin Gene Repertoire. Blood Advances. 2020 Apr 14;4(7):1357.

5. Pintu Chandra Shill, Bishnu Sarker, Monalisa Chowdhury Urmi  and Kazuyuki Murase, “Quantum Fuzzy Controller for Inverted Pendulum System Based on Quantum Genetic Optimization”, International Journal of Advanced Research on Computer Science (IJARCS),Vol. 3 No. 7, Nov-Dec, 2012.

6. Pintu Chandra Shill, Bishnu Sarker and Kazuyuki Murase, "Evolutionary Tuning of Fuzzy Rule Base Systems for Non Linear System Modeling and Control”, International Journal of Computer Science & Information Technology (IJCSIT) , Vol 4 No 5 pp 125-143, 2011.

7. Md. Amjad Hossain, Pintu Chandra Shill, Bishnu Sarker and Kazuyuki Murase, "Optimal Fuzzy Model Construction With Statistical Information using Genetic Algorithm”, International Journal of Computer Science & Information Technology (IJCSIT) ,  Vol 3, No 6,  pp 241-257, Dec 2011.

International Conferences:

1.   Fairuz Shadmani Shishir, Bishnu Sarker, Farzana Rahman and Sumaiya Shomaji. MetaLLM: Residue-wise Metal ion Prediction Using Deep Transformer Model. In International Work-Conference on Bioinformatics and Biomedical Engineering, 2023 (accepted).

2. Sellami, A., Bishnu Sarker., Tabbone, S., Devignes, MD., Aridhi, S. (2022). A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation. In: Rojas, I., Valenzuela, O., Rojas, F., Herrera, L.J., Ortuño, F. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2022. Lecture Notes in Computer Science, vol 13347. Springer, Cham. https://doi.org/10.1007/978-3-031-07802-6_14 

3. Bishnu Sarker, Khare N., Devignes MD., Aridhi S. Graph Based Automatic Protein Function Annotation Improved by Semantic Similarity.  In: Rojas I., Valenzuela O., Rojas F., Herrera L., Ortuño F. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2020. Lecture Notes in Computer Science, vol 12108. Springer, Cham. 

4. Bishnu Sarker, David W. Ritchie, and Sabeur Aridhi, Functional Annotation of Proteins Using Domain Embedding Based Sequence Classification, In Proc. of 11th International Conference on Knowledge Discovery and Information Retrieval (KDIR),Vienna, Austria, 17-19 September, 2019.

5. Bishnu Sarker, David W. Ritchie, and Sabeur Aridhi, Exploiting Complex Protein Domain Networks for Protein Function Annotation, In Proc. of International Conference on Complex Networks and Their Applications, University of Cambridge, UK, 11-13 December, 2018.

6. Bishnu Sarker, Derar Alhussein, Maria Slanova, Mehreen Ikram, and Costin Chiru,  Time Series Analysis of Large Corpora for Estimating Books’ Publication Years, In Proc. of  International work-conference on Time Series (ITISE 2016), Granada, Spain, 2016.

7. Animesh K. Paul, Rajib Hossen, Monalisa C. Urmi and Bishnu Sarker*, An Approach to Demand Side Load Curtailment for the Future Intelligent and Smart Power Grid of Bangladesh, In Proc. of  1st International Conference on Electrical Engineering and Information & Communication Technology ( ICEEICT), Dhaka, Bangladesh, 2014.

8. Kaidul Islam and Bishnu Sarker*, Designing A press and Swipe Type Single Layered Bangla Soft Keyboard for Android Devices,  In Proc. of 16 th International Conference on Computer and Information Technology (ICCIT), Khulna, Bangladesh , 2013. (In Press) (Acceptance Rate about 30%).

9. Monalisa C. Urmi and Bishnu Sarker,  Optimizing User Satisfaction with the Blessings of Intelligent Load Management and Smart Metering Through Customization of Load-Shedding in Bangladesh, In Proc. of International Conference on Engineering Research, Innovation and Education (ICERIE), PP. 470-476, Sylhet, Bangladesh, 2013.

10. Pintu Chandra Shill, Bishnu Sarker and Kazuyuki Murase, Particle Swarm Optimization Based Adaptive Strategy for Tuning of Fuzzy Rule Base Systems, In Proc. of International Conference on Engineering Research, Innovation and Education (ICERIE), PP. 328-334,Sylhet, Bangladesh, 2013.

11. Muhammad Sheikh Sadi, Md. NazimUddin, Bishnu Sarker, Tanay Roy, Minimizing Time Overhead to Detect Soft Errors through Preceding Variable Analysis, In Proc. of 14th International Conference on Computer and Information Technology (ICCIT), Dhaka, Bangladesh ,2011 (Acceptance Rate about 30%).