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BioSwitch is a Matlab software tool for detection of multi-steady state behaviour in biochemical reaction networks (specially suited for signaling and gene regulatory networks)
BioSwitch is a Matlab software tool for detection of multi-steady state behaviour in biochemical reaction networks (specially suited for signaling and gene regulatory networks)
BioSwitch detects LIMIT POINTS (also known as SADDLE-NODES) starting from the NETWORK GRAPH OF COMPLEXES
BioSwitch detects LIMIT POINTS (also known as SADDLE-NODES) starting from the NETWORK GRAPH OF COMPLEXES
INPUT to BioSwitch: (C-graph: SETS of SPECIES, COMPLEXES and REACTIONS)
INPUT to BioSwitch: (C-graph: SETS of SPECIES, COMPLEXES and REACTIONS)
OUTPUTS of BioSwitch:
OUTPUTS of BioSwitch:
- NETWORK EVALUATION: Deficiency, number of mass conservation laws, and other properties of interest
- NETWORK EVALUATION: Deficiency, number of mass conservation laws, and other properties of interest
- LIMIT POINT: Set of parameters and steady state concentrations of a LIMIT POINT (if it exists)
- LIMIT POINT: Set of parameters and steady state concentrations of a LIMIT POINT (if it exists)
- BIFURCATION DIAGRAM: Bifurcation diagram starting from the LIMIT POINT (computed by CL-Matcont).
- BIFURCATION DIAGRAM: Bifurcation diagram starting from the LIMIT POINT (computed by CL-Matcont).
Download BioSWITCH V 1.0.0 (link to github repository):
Download BioSWITCH V 1.0.0 (link to github repository):
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