Archaeopteryx.js

Overview

Archaeopteryx.js is a software tool for the visualization and analysis of potentially large and highly annotated phylogenetic trees on the web. 

Archaeopteryx.js is written in JavaScript and makes use of the D3.js JavaScript library. Currently, Archaeopteryx.js can read and display trees in phyloXML and New Hampshire/Newick format.

The desktop counterpart of Archaeopteryx.js is Archaeopteryx.

Demos

• Bcl-2 gene family (with gene duplications)

• Eukaryotic tree of life (collapsed)

• Eukaryotic tree of life

• Influenza Hemagglutinin (HA) proteins (includes meta-data visualizations)

• Herpesviridae DNA polymerases  (includes meta-data visualizations)

• Bunyaviridae Glycoprotein

• Amphibian phylogeny

• Viral Strains

• SARS-CoV-2 (alpha)

Documentation

• documentation for users

• documentation for developers

• version history

Source Code

• GitHub

• npm

last updated: 2023-04-22