3dSpAn: 3D Spine Analysis Software

Citation:

• Das N, Baczynska E, Bijata M, Ruszczycki B, Zeug A, Plewczynski D, Saha PK, Ponimaskin E, Wlodarczyk J, Basu S. 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines. Neuroinformatics. 2021 Nov 7. doi: 10.1007/s12021-021-09549-0. Epub ahead of print. PMID: 34743262.

• Subhadip Basu, P. K. Saha, M. Roszkowska, M. Magnowska, E. Baczynska, N. Das, D. Plewczynski and J. Wlodarczyk, “Quantitative 3-D morphometric analysis of individual dendritic spines,” Scientific Reports, 8: 354, 2018

• P. K. Saha, Subhadip Basu, E. A. Hoffman, “Multi-Scale Opening of Conjoined Fuzzy Objects: Theory and Applications,” IEEE Transactions on Fuzzy Systems, vol. 24, no. 5, pp. 1121-1133, 2016.

Software Development Team:

• Prof. Subhadip Basu, Department of Computer Science & Engineering, Jadavpur University, Kolkata-32, INDIA

Email: Subhadip.Basu@JadavpurUniversity.in

• Mr. Nirmal Das, Ph.D. Scholar, Department of Computer Science & Engineering, Jadavpur University, Kolkata-32, INDIA

Major Collaborators:

• Prof. Jakub Wlodarczyk, Nencki Institute of Experimental Biology, POLAND. Email: j.wlodarczyk@nencki.edu.pl

• Ms. Ewa Bączyńska, Nencki Institute of Experimental Biology, POLAND. Email: e.baczynska@nencki.edu.pl

• Prof. Punam Kumar Saha, University of Iowa, USA.

• Prof. Dariusz Plewczynski, University of Warsaw, POLAND.

• Prof. Evgeni Ponimaskin, Hannover Medical School, GERMANY

• Dr. Andre Zeug, Hannover Medical School, GERMANY

Technical Insight:

3dSpAn is a cross-platform utility and is primarily developed using the C++ libraries of the Qt SDK.

Code license: LGPL V3

Software Copyright: Prof. Subhadip Basu and Prof. Jakub Wlodarczyk