week 1
week 2
week 3
week 4
week 5
week 6
week 7
week 8
week 9
biological numeracy (slides)
*programming boot camp: (i) setting up python on your machine, (ii) python tutorial
biology by number (slides)
population growth and biological time scales (slides, notes)
biological time scales and central dogma (notes)
*programming tutorial (numerical integration and different growth models, exponential, logistic and SIR model)
statistics in cell division (notes)
*programming tutorial (distributions and their statistics)
diffusion I: scaling relations and Fick's law (notes)
diffusion II: coin flip (notes)
*programming tutorial (diffusion and the random walk)
diffusion III: continuous process (notes)
diffusion IV: continuous process in a cell (notes)
diffusion V: probabilistic approach (notes)
gene regulation I - thermodynamics (notes, slides)
gene regulation II - statistical mechanics (notes)
gene regulation III - Master equation (notes)
*programming tutorial (Gillespie algorithm)
gene regulation - cooperative binding (notes, slides)
statistical physics of gene regulation (notes)
evolutionary theory (notes, slides)