Ph.D. Thesis
Title: "Molecular Dynamics Study of Solid-Liquid Heat Transfer and Passive Liquid Flow." 
Sumith Yesudasan, 2016


Journal Publications

  1. Sumith Yesudasan and Rodney D. Averett, "Multiscale Network Model for Fibrin Fibers and Fibrin Clot with Protofibril Binding Mechanics" (TBD) (2018) (pdf)
  2. Sumith Yesudasan and Rodney D. Averett, "Recent Advances in Computational Modeling of Fibrin Clot Formation: A Review", Computational Biology and Chemistry, (2018) (in press)
  3. Sumith Yesudasan and Rodney D. Averett, "Fracture Mechanics Analysis of Fibrin Fibers using Continuum and Mesoscale Techniques", Computers in Biology and Medicine (2018) (in press)
  4. Jacob E. Hood, Sumith Yesudasan and Rodney D. Averett. "Glucose Concentration Affects Fibrin Clot Structure and Morphology as Evidenced by Fluorescence Imaging and Molecular Simulations", Clinical and Applied Thrombosis/Hemostasis (2018) (link)
  5. Sumith Yesudasan, Xianqiao Wang, and Rodney D. Averett. "Fibrin Polymerization Simulation using a Reactive Dissipative Particle Dynamics Method", Biomechanics and Modeling in Mechanobiology (2018) (link)
  6. Sumith Yesudasan, Simone A. Douglas, Manu O. Platt, Xianqiao Wang and Rodney D. Averett, "Molecular Insights into the Irreversible Mechanical Behavior of Sickle Hemoglobin" Journal of Biomolecular Structure and Dynamics (2018) (link)
  7. Sumith Yesudasan, Xianqiao Wang, and Rodney D. Averett. "Coarse Grain Molecular Dynamics Simulations of Fibrin Polymerization: Effects of Thrombin Concentration on Fibrin Clot Structure." Journal of Molecular Modeling (2018) 24: 109. https://doi.org/10.1007/s00894-018-3642-7 and arXiv:1710.00123
  8. Scogin, T., Yesudasan, Sumith, Walker, M.L. and Averett, R.D. "Electromagnetically induced distortion of a fibrin matrix with embedded microparticles". Journal of Mechanics in Medicine and Biology, Volume 18, Issue 2, 1850016 (2018) and arXiv:1611.00633v2. (2017) (pdf)
  9. Sumith Yesudasan, Xianqiao Wang, and Rodney D. Averett. "Molecular dynamics simulations indicate that deoxyhemoglobin, oxyhemoglobin, carboxyhemoglobin, and glycated hemoglobin under compression and shear exhibit an anisotropic mechanical behavior." Journal of Biomolecular Structure and Dynamics (2017): 1-13, (DOI 10.1080/07391102.2017.1323674and arXiv:1702.06786. (pdf)
  10. Sumith Yesudasan, and Maroo, Shalabh C. "A Direct Two-Dimensional Pressure Formulation in Molecular Dynamics." Journal of Molecular Graphics and Modeling Volume 79, Pages 230–234 (2017) and arXiv:1607.05093 (pdf)
  11. Sumith Yesudasan, and Shalabh C. Maroo. "A Robust Algorithm for Contact Angle and Interface Detection of Water and Argon Droplets." Heat Transfer Engineering 38.14-15 (2017): 1343-1353. (pdf)
  12. Sumith Yesudasan, and Maroo, Shalabh C. "Origin of Surface-Driven Passive Liquid Flows." Langmuir 32.34 (2016): 8593-8597. (pdf)
  13. Sumith Yesudasan, and Maroo, Shalabh C. "Surface-Heating Algorithm for Water at Nanoscale." The Journal of Physical Chemistry Letters 6.18 (2015): 3765-3769. (pdf)
  14. Sumith Yesudasan. "An Efficient Algorithm for Contact Angle Estimation in Molecular Dynamics Simulations." International Journal of Engineering (2015) (pdf)