Publications

Electron microscopy of biotinylated protein complexes bound to streptavidin monolayer crystals.

Han BG, Walton RW, Song A, Hwu P, Stubbs MT, Yannone SM, Arbelaez P, Dong M, Glaeser RM.

J Struct Biol. 2012 May 11. [Epub ahead of print]


Metals in biology: defining metalloproteomes. Yannone SM, Hartung S, Menon AL, Adams MW, Tainer JA. Curr Opin Biotechnol. 2012 Feb;23(1):89-95. Epub 2011 Dec 2.


Parallel evolution of transcriptome architecture during genome reorganization.Yoon SH, Reiss DJ, Bare JC, Tenenbaum D, Pan M, Slagel J, Lim S, Hackett M, Menon AL, Adams MW, Barnebey A, Yannone SM, Leigh JA, Baliga NS, Genome Res. 2011 Jul 12.  


The DNA repair endonuclease XPG interacts directly and functionally with the WRN helicase defective in Werner syndrome. Trego KS, Chernikova SB, Davalos AR, Perry JJ, Finger LD, Ng C, Tsai MS, Yannone SM, Tainer JA, Campisi J, Cooper PK, Cell Cycle. 2011 Jun 15;10(12):1998-2007   


Restoration of G1 chemo/radioresistance and double-strand-break repair proficiency by wild-type but not endonuclease-deficient Artemis. Mohapatra S, Kawahara M, Khan IS, Yannone SM, Povirk LF, Nucleic Acids Res. 2011 Apr 29.  

PMID:
 
21531702

Metabolite Identification in Synechococcus sp. PCC 7002 Using Untargeted Stable Isotope Assisted Metabolite Profiling.  Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR.  Anal Chem. 2010 Oct 14. PMID: 20945921

 

Microbial metalloproteomes are largely uncharacterized.  Cvetkovic A, Menon AL, Thorgersen MP, Scott JW, Poole FL 2nd, Jenney FE Jr, Lancaster WA, Praissman JL, Shanmukh S, Vaccaro BJ, Trauger SA, Kalisiak E, Apon JV, Siuzdak G, Yannone SM, Tainer JA, Adams MW.  Nature. 2010 Aug 5;466(7307):779-82.  

PMID:
 
20639861

 

Identification of a coiled coil in werner syndrome protein that facilitates multimerization and promotes exonuclease processivity.  Perry JJ, Asaithamby A, Barnebey A, Kiamanesch F, Chen DJ, Han S, Tainer JA, Yannone SM.  J Biol Chem. 2010 Aug 13;285(33):25699-707. 

 

Radiosensitivity profiles from a panel of ovarian cancer cell lines exhibiting genetic alterations in p53 and disparate DNA-dependent protein kinase activities.  Langland GT, Yannone SM, Langland RA, Nakao A, Guan Y, Long SB, Vonguyen L, Chen DJ, Gray JW, Chen F.  Oncol Rep. 2010 Apr;23(4):1021-6.    PMID: 20204287       

 

A non-leaky Artemis-deficient mouse that accurately models the human severe combined immune deficiency phenotype, including resistance to hematopoietic stem cell transplantation. Xiao Z, Dunn E, Singh K, Khan IS, Yannone SM, Cowan MJ.  Biol Blood Marrow Transplant. 2009 Jan;15(1):1-11.    PMID: 19135937         

 

A novel missense RAG-1 mutation results in T-B-NK+ SCID in Athabascan-speaking Dine Indians from the Canadian Northwest Territories.  Xiao Z, Yannone SM, Dunn E, Cowan MJ.  Eur J Hum Genet. 2009 Feb;17(2):205-12.  PMID: 18701881        

 

Telomere dysfunction and cell survival: roles for distinct TIN2-containing complexes.  Kim SH, Davalos AR, Heo SJ, Rodier F, Zou Y, Beausejour C, Kaminker P, Yannone SM, Campisi J.  J Cell Biol. 2008 May 5;181(3):447-60. PMID: 18443218        

 

Coordinate 5' and 3' endonucleolytic trimming of terminally blocked blunt DNA double-strand break ends by Artemis nuclease and DNA-dependent protein kinase.  Yannone SM, Khan IS, Zhou RZ, Zhou T, Valerie K, Povirk LF.  Nucleic Acids Res. 2008 Jun;36(10):3354-65. PMID: 18440975   

 

A nanostructure-initiator mass spectrometry-based enzyme activity assay.  Northen TR, Lee JC, Hoang L, Raymond J, Hwang DR, Yannone SM, Wong CH, Siuzdak G.  Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3678-83. PMID: 18319341       

 

Processing of 3'-phosphoglycolate-terminated DNA double strand breaks by Artemis nuclease.  Povirk LF, Zhou T, Zhou R, Cowan MJ, Yannone SM.  J Biol Chem. 2007 Feb 9;282(6):3547-58. PMID: 17121861

 

WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing.  Perry JJ, Yannone SM, Holden LG, Hitomi C, Asaithamby A, Han S, Cooper PK, Chen DJ, Tainer JA.  Nat Struct Mol Biol. 2006 May;13(5):414-22. Epub 2006 Apr 23.    PMID: 16622405

 

Radiosensitization of MDA-MB-231 breast tumor cells by adenovirus-mediated overexpression of a fragment of the XRCC4 protein.  Jones KR, Gewirtz DA, Yannone SM, Zhou S, Schatz DG, Valerie K, Povirk LF.  Mol Cancer Ther. 2005 Oct;4(10):1541-7.  PMID: 16227403

 

Artemis deficiency confers a DNA double-strand break repair defect and Artemis phosphorylation status is altered by DNA damage and cell cycle progression.  Wang J, Pluth JM, Cooper PK, Cowan MJ, Chen DJ, Yannone SM.  DNA Repair (Amst). 2005 May 2;4(5):556-70.    PMID: 15811628

 

Targeted disruption of the Artemis murine counterpart results in SCID and defective V(D)J recombination that is partially corrected with bone marrow transplantation.  Li L, Salido E, Zhou Y, Bhattacharyya S, Yannone SM, Dunn E, Meneses J, Feeney AJ, Cowan MJ.  J Immunol. 2005 Feb 15;174(4):2420-8.  PMID: 15699179

 

Novel function of the flap endonuclease 1 complex in processing stalled DNA replication forks.  Zheng L, Zhou M, Chai Q, Parrish J, Xue D, Patrick SM, Turchi JJ, Yannone SM, Chen D, Shen B.  EMBO Rep. 2005 Jan;6(1):83-9.  PMID: 15592449        

 

The adenovirus E4orf6 protein inhibits DNA double strand break repair and radiosensitizes human tumor cells in an E1B-55K-independent manner.  Hart LS, Yannone SM, Naczki C, Orlando JS, Waters SB, Akman SA, Chen DJ, Ornelles D, Koumenis C.  J Biol Chem. 2005 Jan 14;280(2):1474-81.  PMID: 15507430

 

In vitro and in vivo interactions of DNA ligase IV with a subunit of the condensin complex.  Przewloka MR, Pardington PE, Yannone SM, Chen DJ, Cary RB.  Mol Biol Cell. 2003 Feb;14(2):685-97.    PMID: 12589063         

 

Requirement for XRCC4 and DNA ligase IV in alignment-based gap filling for nonhomologous DNA end joining in vitro.  Lee JW, Yannone SM, Chen DJ, Povirk LF.  Cancer Res. 2003 Jan 1;63(1):22-4.    PMID: 12517771

 

Defining interactions between DNA-PK and ligase IV/XRCC4.  Hsu HL, Yannone SM, Chen DJ.  DNA Repair (Amst). 2002 Mar 28;1(3):225-35.    PMID: 12509254

 

Werner syndrome protein is regulated and phosphorylated by DNA-dependent protein kinase.  Yannone SM, Roy S, Chan DW, Murphy MB, Huang S, Campisi J, Chen DJ.  J Biol Chem. 2001 Oct 12;276(41):38242-8.  PMID: 11477099

 

A possible role of Ku in mediating sequential repair of closely opposed lesions.  Hashimoto M, Donald CD, Yannone SM, Chen DJ, Roy R, Kow YW.  J Biol Chem. 2001 Apr 20;276(16):12827-31.  PMID: 11278783

 

Identification of a palindromic sequence that is responsible for the up-regulation of NAPDH-ferredoxin reductase in a ferredoxin I deletion strain of Azotobacter vinelandii.  Yannone SM, Burgess BK.  J Biol Chem. 1997 May 30;272(22):14454-8.    PMID: 9162086

 

Azotobacter vinelandii NADPH:ferredoxin reductase cloning, sequencing, and overexpression.  Isas JM, Yannone SM, Burgess BK.  J Biol Chem. 1995 Sep 8;270(36):21258-63.  PMID: 7673160 

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