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Many lifelines
Posted Jun 14, 2016, 1:15 PM by Tim Riffe

Reprojections of the Lexis surface
If we think age and period as lat long coordinates, then we can also borrow the analogy of map projections. There is a large but finite number of ways to project the Lexis surface as it is (rotations, reflections, isotropic or not, other kinds of time measures, etc), but there are an infinite number of ways to reproject any of the time measures used as axes, thereby reprojecting whatever data is being shown on the surface. I'll use the example of an age pattern. This is very much in line with the previous post, where age itself was reprojected, and it's a basic extention of the SandersonScherbov method of standardizing age patterns by distorting age in one of them. Let's start with the following standard Lexis surface of fertility.
Behold 120+ years of Sweden: ( HFD) There are plenty of stories one can tell here. Now let's use the trick from the previous post, and transform the y=axis. The trick to transforming the yaxis is that the ycoordinate for each x coordinate must remaing comparable with respect to the function that you use to transform. I'll take the example of survival quantiles, because for each year we have a period survival function, l(x) ( HMD), which tells us the proportion surviving at each age x. If youinvert this then it tells you the age at which a given proportion of the synthetic population remains alive. Ergo, the ages that correspond to quantiles. These change over time, as mortality jumps about and/or gradually improves. We want the quantiles themselves as the new yaxis (last post it was remaining life expectancy, but now using survivial quantiles, just because). So, 1) for a given quantile and year, find the exact age that it corresponds to, 2) find the fertility rate that corresponds to that exact age (I use splines for both steps) 3) wash, wrinse, repeat over the whole surface: voila:
Same data! OK, we know the story, reproductive ages are now almost completely survived through. But it wasn't always the case! But that's not the point of this post. The point is the idea of reprojecting one or more axes of the Lexis surface, and its variants. All you need are two time series of data that is structured on the same agelike index (lifespan, timetodeath, time since X, time until X, etc). Here I chose lifespan quantiles, but it could have easily been another (preferably monotonic, but not necessarily so) lifetable function (or a function of a lifetable function!). Nor must it be a lifetable function. In this case we could have used ANY agepattern to reproject. You could use fertility to reproject any aspect of mortality, for instance (but there might be more details to sort out).
Maybe I'll post another example sometime.
I presented this idea to some graphics pros yesterday at the Fraunhofer Institute in Rostock, and you can find the code in a repo for that presentation.

Posted May 27, 2016, 2:03 AM by Tim Riffe

A prospective age Lexis surface? Convoluted Spielen
One could simply plot remaining life expectancy on a Lexis surface. That'd be the smart thing to do. Not what I'm going to do here, which is Sunday goofing off.
First let's swap out age with prospective age. A prospective age is the age where you hit some some fixed level of remaining life expectancy. Since mortality changes depending on where and when you are prospective ages change too. This is a concept that Warren Sanderson and Sergei Scherbov use a lot. Here's the main goto paper that explains it all in a compelling way. It's the basis of demographers starting to say things like "60 is the new 50", etc. People had been saying that kind of thing already, and noticing active aged people more and more, but the lifetable gives a nice objective basis for sayings like that. The idea is to take some fixed remaining life expectancy like 40 or whatever, and ask which age it belongs to. That usually requires some interpolation. So here's a calculator to do it (as well as a survival quantile calculator), and the image I want to explain (it's US females, by the way, HMD, as usual)
So, we have remaining life expectancy on the yaxis, and calendar year on the xaxis. The zcoordinate that is plotted is chronological age, which is represented both with color (darker blue higher age) and with labelled black contour lines. All the countours are increasing, which just means that remaining life expectancy is increasing at all ages. Where the contours are steeper it increased faster. There is a light 5x5 grid. for e(x) and year. Following any of the horizontals will tell you the Age at which the given remaining life expectancy was hit. So, for example, follow the e(x) = 25 line. Around 1945 it hits age 50, and in the most recent year it hits 60. Ergo 60year olds today have the remaining life expectancy of 50year olds in 1945, hence "60 is the new 50". It's awesome to find quick increases, but this plot doesn't have many (many other populations of the world have had more drammatic gains than the USA, by the way).
Finally the yellow descending lines are birth cohorts, and their wavy pattern shows how we've not only flipped, but also irregularly distorted the Lexis diagram. These allow for more comparisons. Of course the surface uses period mortality, so there's another level of distortion in it that simply isn't revealed. One could use cohort data for either a restricted range of e(x) and/or age, or else switch to a country like Sweden, which has a long series of data and lets you do pretty much any formal demog you want.
Here's the code, including a survival quantile lookup function, also based on a spline. You could also repeat the same Lexisish transformation with survival quantiles on the yaxis.... And you couldplot e(x) with one contour plot, and age with another contour plot above that. Oh dear, the possibilities are endless.
(FYI, to see this code, you probably need to actually click on the link to this post. I think it doesnt' show up at the top level blogish part of this website)
github gistThe gadget spec URL could not be found

Posted May 1, 2016, 11:51 AM by Tim Riffe

Decomposing the population pyramid à la Vaupel & Yashin (1987)
I'm a fan of Vaupel & Yashin (1987) Repeated rescuscitation: How lifesaving alters lifetables (this paper, possibly paywalled) Here is a Jstor Link to the same article.
Under some strict assumptions, they derive how hypothetical improvements in mortality rates can be translated to saved lives, but that the process can be repeated indefinitely. Among the items derived is the composition of the stationary population by the numbers of times individuals have been saved. In the article, they decompose period l(x) schedules by making period comparisons. One thing that I'm always messing around with is the idea that cohort longevity has typically (always?) been better than that belonging to the period lifetables in which cohorts are born. For example, I was born in 1981, with a period e(0) of 70.81 . Ya right! By cohort is going to outperform that by a mile! One could already say that the force of mortality that I've been winning against so far my whole life is a perturbation of that which was observed in the USA in 1981. In this way, the 1981 period mortality schedule is the one I'm comparing to. I'm now 34 (I think...), so I have 35 singleage values of cohort m(x) of my own that can be compared with the period m(x) from ages 0 to 34 in 1981. Make sense?
The difference in these two series of m(x) can translate into uppercase Lambda from equation 10 and onwards in the abovelinked paper. I can also get l(x) from these period and cohort m(x) series for the sake of comparison, and this gives everything needed for eq 10 in the paper. Ergo, I can decompose my cohort into those whose lives have been saved 0,1,2,... times due to improvements in mortality since we were born. And likewise for all the other cohorts passing through the population pyramid this year.
In order to break down the upper ages of the pyramid into how many times they've hypothetically been saved thus far, we need a mortality series stretching far enough back in time. The HMD contains a few such series. I'll take Sweden, because it's everyone's toy dataset for stuff like this: you just know it's going to work before you even start!
So, following my periodcohort comparison of mortality schedules to derive cumulative rate improvements, we get the following decomposition of the 2012 Swedish population pyramid:
The central offwhite area are those whose lives have 'never' been saved, and then each successive shade of purple increments the number of times you've been saved. Looks like most 80year females (right side) have been saved at least once, for instance.
This is all hypothetical it assumes that ongoing mortality risk is the same for those that were saved 0 or 1 or 2 or more times. Inclusion of frailty would change the whole picture. But then we've never seen a pyramid decomposed by a frailty distribution because they're hypothetical too, not really observable directly unless you make more assumptions to instrumentalize the notion.
Here's the code:
Vaupel & Yashin (1987) in RThe gadget spec URL could not be found
Note that one of the data objects required to reproduce this is uploaded at the bottom of this post. You could download the cohort death rates from the HMD, but these are not available for cohorts with fewer than 30 observations, which we need. So I derived them straight from the HMD raw data, which is a bit extra work.

Posted Mar 1, 2016, 10:10 AM by Tim Riffe

FAQ: The 1/3 and 2/3 in the HMD version 5 exposure formula
It doesn't take that much work to convince oneself that the HMD population exposure formula (version 5, soon to be incremented) makes sense (if you accept the assumptions). The assumptions are simple: Assume that deaths in the upper and lower Lexis triangles are uniformly distributed (and no migration). This is the formula:
Exposure = 1/2 * January 1st population  2/3 deaths in the upper triangle + 1/2 December 31st population + 1/3 deaths in lower triangle
It's easy to accept the (Jan+Dec) / 2 part of the formula, but a bit more difficult to wrap one's mind around the  2/3 and the +1/3 parts for the triangles.
If you look in Appendix E of the version 5 protocol, you'll get the calculusbased explanation: Fair is fair, but it's not intuitive to that many people, so I'll show it numerically (you need to play along in R), and then give a nonrigorous geometric explanation, which is however intuitive (I think).
Next some code and an inspirational Lexis square to prove it to yourself: Jan 1 pop is P1, and Dec 31 pop is P2. Deaths in upper triangle are DU, and DL is the lower.
This Lexis square is a bit awkward to prove the 1/3, 2/3 thing graphically, so I'll put an equilateral one at the end, which might help. First note that all the tdeaths in DU should have been counted alive in P1. So, 1/2 * P1 would be an overestimate of the years those people lived in the triangle. So, we need to subtract some portion of DU to account for the years not lived in the triangle due to deaths. Under uniformty, the number of years they lived in the triangle on average is 1/3, so we need to subtract 2/3. We still need to show that 1/3 is the average. In the same way, the deaths in DL are not counted in P2, which means 1/2*P2 is an underestimate so we need to add some portion of DL, and they average years they lived in the triangle is also 1/3.
Here's R code to simulate this numerically, which I'll explain a bit here. First, the years lived by individuals passing through the square are diagonals, but this way of drawing the Lexis diagram stretches lifelines by sqrt(2) because they're shown as a hypotenuse... So that's why the image is awkward. Instead, from this image, imagine the life lived by those dying in the upper triangle as the distance in x from P1, whereas the life lived by those dying in the lower triangle is the distance lived in y from the lower bound of the square.
Follow along in the code to see that the average years lived in each triangle are 1/3, and that the rest therefore makes sense.
Show it in R!The gadget spec URL could not be found
And here is a more visually appealing proof using the equilateral version of Lexis (annotation below) If we constrain age, period, and cohort to use the same units we end up with equilateral Lexis triangles. Convince yourself that the orange circles are the center of gravity of each triangle (they are!). Now focus on the lower triangle. The lower line is 1 year long (as is the diagonal, because it's equilateral...). If I cut the lower line into thirds, we get the points a,b,c, etc. We know that the distance from a to b is 1/3, ergo, and from b to c is 1/3. Now notice that the points b,c,d form a new equilateral triangle. And so we know that the segment b,d is 1/3 long as well. Ah! And that's the one that lifelines are parallel to! and since the uniform average of the triangle is at d, we know that it took on average 1/3 of a year to get to d. Voila, we are now convinced about the 1/3 thing in the triangles.
move along, nothing to see here.

Posted Feb 26, 2016, 1:47 AM by Tim Riffe
The inelegant oldschool 1page blog has now migrated to the 'blog' tab on the left. This page only shows the 5 most recent entries.

