PDB: 8Q3I, 8QN8, 8QU6, 8R3M, 8R2M, 8R6P, 8R6R, 8QTI
Mycobacterial HelD
Kovaľ, T., Borah, N., Sudzinová, P. et al.
Mycobacterial HelD connects RNA polymerase recycling with transcription initiation.
DOI: https://doi.org/10.1038/s41467-024-52891-5
Nat Commun 15, 8740 (2024)
PDB: 8QJL, 8QJM, 8QJN, 8QJO, 8QJP, 8QJQ, 9EMG
Stenotrophomonas maltophilia nuclease SmNuc1 with ligands
Kristýna Adámková; Mária Trundová; Tomáš Kovaľ; Blanka Husťáková; Petr Kolenko; Jarmila Dušková; Tereza Skálová; Jan Dohnalek
Substrate preference, RNA binding and active site versatility of Stenotrophomonas maltophilia nuclease SmNuc1, explained by a structural study
FEBS Journal 292 (2025), 129-152 , https://doi.org/10.1111/febs.17265
PDB: 8AQ8
FAD-dependent monooxygenase from Stenotrophomonas maltophilia
Malý, Martin; Kolenko, Petr; Stránský, Jan; Švecová, Leona; Dušková, Jarmila; Koval', Tomáš; Skálová, Tereza; Trundová, Mária; Adámková, Kristýna; Černý, Jiří; Božíková, Paulína; Dohnálek, Jan
Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia
DOI: https://doi.org/10.1107/S2053230X23005381
PDB: 7QTA
S1 nuclease from Aspergillus oryzae in complex with uridine
Adámková, Kristýna - Koval, Tomáš - Ostergaard, L. H. - Dušková, Jarmila - Malý, Martin - Švecová, Leona - Skálová, Tereza - Kolenko, Petr - Dohnálek, Jan
Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
PDB: 7QTB
S1 nuclease from Aspergillus oryzae in complex with cytidine-5'-monophosphate
Adámková, Kristýna - Koval, Tomáš - Ostergaard, L. H. - Dušková, Jarmila - Malý, Martin - Švecová, Leona - Skálová, Tereza - Kolenko, Petr - Dohnálek, Jan
Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
PDB: 6TVK
Alpha-L-fucosidase isoenzyme 2 from Paenibacillus thiaminolyticus
Kovaľová, T., Kovaľ, T., Stránský, J., Kolenko, P., Dušková, J., Švecová, L., Vodičková, P., Spiwok, V., Benešová, E., Lipovová, P., Dohnálek, J.
The first structure–function study of GH151 α-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity
https://doi.org/10.1111/febs.16387
PDB: 5MGR
Blaha, J. - Skálová, Tereza - Kalousková, B. - Skořepa, O. - Cmunt, D. - Grobárová, V. - Pažický, S. - Polachova, E. - Abreu, C. -
Stránský, Jan - Koval, Tomáš - Dušková, Jarmila - Zhao, Y. - Harlos, K. - Hašek, Jindřich - Dohnálek, Jan - Vaněk, O.
Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
PDB: 5MGS
Blaha, J. - Skálová, Tereza - Kalousková, B. - Skořepa, O. - Cmunt, D. - Grobárová, V. - Pažický, S. - Polachova, E. - Abreu, C. -
Stránský, Jan - Koval, Tomáš - Dušková, Jarmila - Zhao, Y. - Harlos, K. - Hašek, Jindřich - Dohnálek, Jan - Vaněk, O.
Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
PDB: 5MGT
Blaha, J. - Skálová, Tereza - Kalousková, B. - Skořepa, O. - Cmunt, D. - Grobárová, V. - Pažický, S. - Polachova, E. - Abreu, C. -
Stránský, Jan - Koval, Tomáš - Dušková, Jarmila - Zhao, Y. - Harlos, K. - Hašek, Jindřich - Dohnálek, Jan - Vaněk, O.
Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
PDB: 6ZE2
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 804
PDB: 6ZE3
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 805
PDB: 6ZE4
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 806
PDB: 6ZE5
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 807
PDB: 6ZE6
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 808
PDB: 6ZE7
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 809
PDB: 7AA2
Švecová, L., Østergaard, L.H., Skálová, T., Schnorr, K.M., Koval', T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J., Dohnálek, J.
Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Acta Cryst. 2021, D77
https://doi.org/10.1107/S2059798321003533
SBGrid Data Bank: 810
PDB: 6T3O
Crystal structure of the human myomesin domain 10
Kuchar, M., Kosztyu, P., Daniel Liskova, V., Cerny, J., Petrokova, H., Vroblova, E., Maly, M., Vankova, L., Krupka, M., Raskova Kafkova, L., Turanek Knotigova, P., Duskova, J., Dohnalek, J., Masek, J., Turanek, J., Raska, M., Maly, P.
Myomedin scaffold variants targeted to 10E8 HIV-1 broadly neutralizing antibody mimic gp41 epitope and elicit HIV-1 virus-neutralizing sera in mice.
Virulence (2021), 12, 1271-1287
PDB: 6YJP
Skořepa, O.; Pazicky, S.; Kalousková, B.; Bláha, J.; Abreu, C.; Ječmen, T.; Rosůlek, M.; Fish, A.; Sedivy, A.; Harlos, K.; Dohnálek, J.; Skálová, T.; Vaněk, O.
Natural Killer Cell Activation Receptor NKp30 Oligomerization Depends on Its N-Glycosylation.
Cancers 2020, 12, 1998.
https://doi.org/10.3390/cancers12071998
SBGrid Data Bank: 753
PDB: 6OTD
Skalova, T., Lengalova, A., Dohnalek, J., Harlos, K., Mihalcin, P., Kolenko, P., Stranava, M., Blaha, J., Shimizu, T. and Martínková, M.
Disruption of the dimerization interface of the sensing domain in the dimeric heme-based oxygen sensor AfGcHK abolishes bacterial signal transduction
J. Biol. Chem.(2020) 295(6) 1587–1597
http://www.jbc.org/cgi/doi/10.1074/jbc.RA119.01157
PDB: 6YXU (electron microscopy)
Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State I, primary channel engaged
Kouba, T., Kovaľ, T., Sudzinodá, P., Pospíšil, J., Brezovská, B., Hnilicová, J., Šanderová, H., Janoušková, M., Šiková, M., Halada, P., Sýkora, M., Barvík, I., Nováček, J., Trundová, M., Dušková, J., Skálová, T., Chon, U., Murakami, K. S., Dohnálek, J., Krásný, L.
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase
Nature communications (2020) 11:6419
https://doi.org/10.1038/s41467-020-20158-4
PDB: 6YYS (electron microscopy)
Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State II, primary channel engaged and active site interfering
Kouba, T., Kovaľ, T., Sudzinodá, P., Pospíšil, J., Brezovská, B., Hnilicová, J., Šanderová, H., Janoušková, M., Šiková, M., Halada, P., Sýkora, M., Barvík, I., Nováček, J., Trundová, M., Dušková, J., Skálová, T., Chon, U., Murakami, K. S., Dohnálek, J., Krásný, L.
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase
Nature communications (2020) 11:6419
https://doi.org/10.1038/s41467-020-20158-4
Kouba, T., Kovaľ, T., Sudzinodá, P., Pospíšil, J., Brezovská, B., Hnilicová, J., Šanderová, H., Janoušková, M., Šiková, M., Halada, P., Sýkora, M., Barvík, I., Nováček, J., Trundová, M., Dušková, J., Skálová, T., Chon, U., Murakami, K. S., Dohnálek, J., Krásný, L.
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase
Nature communications (2020) 11:6419
https://doi.org/10.1038/s41467-020-20158-4
PDB: 6I3L
Koval, T.,Svecova, L.,Ostergaard, L.H.,Skalova, T.,Duskova, J.,Hasek, J.,Kolenko, P.,Fejfarova, K.,Stransky, J.,Trundova, M.,Dohnalek, J.
Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer
Journal: Sci Rep.
DOI: 10.1038/s41598-019-50105-3
PDB: 6I3K
Koval, T.,Svecova, L.,Ostergaard, L.H.,Skalova, T.,Duskova, J.,Hasek, J.,Kolenko, P.,Fejfarova, K.,Stransky, J.,Trundova, M.,Dohnalek, J.
Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer
Journal: Sci Rep.
DOI: 10.1038/s41598-019-50105-3
PDB: 6I3J
Koval, T.,Svecova, L.,Ostergaard, L.H.,Skalova, T.,Duskova, J.,Hasek, J.,Kolenko, P.,Fejfarova, K.,Stransky, J.,Trundova, M.,Dohnalek, J.
Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer
Journal: Sci Rep.
DOI: 10.1038/s41598-019-50105-3
PDB: 6GN6
Kovaľová, T., Kovaľ, T., Benešová, E., Vodičková, P., Spiwok, V., Lipovová, P., Dohnálek, J.
Active site complementation and hexameric arrangement in the GH family 29; a structure–function study of α-l-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus
Glycobiology (2019), 29 (1), 59–73
PDB: 5OHE
Stranava, M., Man, P., Skalova, T., Kolenko, P., Blaha, J. ,Fojtikova, V. ,Martinek, V. ,Dohnalek, J. ,Lengalova, A. ,Rosulek, M. ,Shimizu, T. ,Martinkova, M.
Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intrapr otein signal transduction.
J. Biol. Chem. (2017), 292(51), 20921–20935.
SBGrid Data Bank: 776
PDB: 5OHF
Stranava, M., Man, P., Skalova, T., Kolenko, P., Blaha, J. ,Fojtikova, V. ,Martinek, V. ,Dohnalek, J. ,Lengalova, A. ,Rosulek, M. ,Shimizu, T. ,Martinkova, M. Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intrapr otein signal transduction.
J. Biol. Chem. (2017), 292(51), 20921–20935.
SBGrid Data Bank: 777
PDB: 5FB9
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J. Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition. PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBA
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBB
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition. PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBC
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBD
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBF
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 5FBG
Kovaľ T, Østergaard LH, Lehmbeck J, Nørgaard A, Lipovová P, Dušková J, Skálová T, Trundová M, Kolenko P, Fejfarová K, Stránský J, Švecová L, Hašek J, Dohnálek J.
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
PLoS ONE 11 e0168832 (2016)
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168832
PDB: 4JDG
J. Stransky, T. Koval', T. Podzimek, A. Tycova, P. Lipovova, J. Matousek, P. Kolenko, K. Fejfarova, J. Duskova, T. Skalova, J. Hasek and J. Dohnalek
The structure of a mutant of tomato multifunctional nuclease TBN1 with phosphate ion bound in the active centre explains the stabilization of the conserved crystal-packing motif of molecular superhelices.
Acta Cryst. (2015). F71, 1408-1415 [http://dx.doi.org/10.1107/S2053230X15018324]
PDB: 4QKG
T. Skálová, J. Bláha, K. Harlos, J. Dušková, T. Koval', J. Stránský, J. Hašek, O. Vaněk and J. Dohnálek
Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states
Acta Cryst. (2015). D71, 578-591 [ doi:10.1107/S1399004714027928 ]
SBGrid Data Bank: 722
PDB: 4QKH
T. Skálová, J. Bláha, K. Harlos, J. Dušková, T. Koval', J. Stránský, J. Hašek, O. Vaněk and J. Dohnálek
Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states
Acta Cryst. (2015). D71, 578-591 [ doi:10.1107/S1399004714027928 ]
SBGrid Data Bank: 723
PDB: 4QKI
T. Skálová, J. Bláha, K. Harlos, J. Dušková, T. Koval', J. Stránský, J. Hašek, O. Vaněk and J. Dohnálek
Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states
Acta Cryst. (2015). D71, 578-591 [ doi:10.1107/S1399004714027928 ]
SBGrid Data Bank: 724
PDB: 4QKJ
T. Skálová, J. Bláha, K. Harlos, J. Dušková, T. Koval', J. Stránský, J. Hašek, O. Vaněk and J. Dohnálek
Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states
Acta Cryst. (2015). D71, 578-591 [ doi:10.1107/S1399004714027928 ]
SBGrid Data Bank: 726
PDB: 3RVA
Andrea Štěpánková, Jarmila Dušková, Tereza Skálová, Jindřich Hašek, Tomáš Koval', Lars Henrik Ostergaard and Jan Dohnálek
Organophosphorous acid anhydrolase from Alteromonas macleodii - a structural study and functional relationship to prolidases
Acta Cryst. (2013) F69, 346-354.
PDB: 3SNG
Tomáš Koval’, Petra Lipovová, Tomáš Podzimek, Jaroslav Matoušek, Jarmila Dušková, Tereza Skálová, Andrea Štěpánková, Jindřich Hašek and Jan Dohnálek
Plant multifunctional nuclease TBN1 with unexpected phospholipase activity: structural study and reaction-mechanism analysis
Acta Cryst. (2013). D69, 213–226
PDB: 4DJ4
Tomáš Koval’, Petra Lipovová, Tomáš Podzimek, Jaroslav Matoušek, Jarmila Dušková, Tereza Skálová, Andrea Štěpánková, Jindřich Hašek and Jan Dohnálek
Plant multifunctional nuclease TBN1 with unexpected phospholipase activity: structural study and reaction-mechanism analysis
Acta Cryst. (2013). D69, 213–2262012
PDB: 3RS1
Data DOI: 10.15785/SBGRID/713
Tereza Skalova, Kristyna Kotynkova, Jarmila Duskova, Jindrich Hasek, Tomas Koval, Petr Kolenko, Petr Novak, Petr Man, Pavel Hanc, Ondrej Vanek, Karel Bezouska, and Jan Dohnalek
Mouse Clr-g, a Ligand for NK Cell Activation Receptor NKR-P1F: Crystal Structure and Biophysical Properties
J. of Immunology, 2012, 189 (10), 4881-4889, [DOI: 10.4049/jimmunol.1200880 ]
SBGrid Data Bank: 713
PDB: 3M9Z
Petr Kolenko, Daniel Rozbesky, Ondrej Vanek, Vladimir Kopecky, Jr.; Katerina Hofbauerova, Petr Novak, Petr Pompach, Jindrich Hasek, Tereza Skalova, Karel Bezouska, Jan Dohnalek
Molecular architecture of mouse activating NKR-P1 receptors
JOURNAL OF STRUCTURAL BIOLOGY, 2011, 175 (3), 434-441
SBGrid Data Bank: 824
PDB: 3KW8
Data DOI: 10.15785/SBGRID/717
Skalova, T; Duskova, J; Hasek, J; Stepankova, A; Koval, T; Ostergaard L.H. and Dohnalek, J.
Structure of laccase from Streptomyces coelicolor after soaking with potassium hexacyanoferrate and at an improved resolution of 2.3 A
Acta Cryst. (2011). F67, 27-32. http://dx.doi.org/10.1107/S1744309110046099
SBGrid Data Bank: 717
PDB: 3CG8
Skalova, T; Dohnalek, J; Ostergaard, LH; Ostergaard, PR; Kolenko, P; Duskova, J; Stepankova, A; Hasek, J
The structure of the small laccase from Streptomyces coelicolor reveals a link between laccases and nitrite reductases
JOURNAL OF MOLECULAR BIOLOGY, 2009, 385, 1165-1178.
SBGrid Data Bank: 718
PDB: 3RJ8
Duskova, J; Dohnalek, J; Skalova, T; Oestergaard, LH; Fuglsang, CC; Kolenko, P; Stepankova, A; Hasek, J
Crystallization of carbohydrate oxidase from Microdochium nivale
ACTA CRYSTALLOGRAPHICA, 2009, F65, 638-640.
SBGrid Data Bank: 796
PDB: 1ZSF
Duskova, J; Dohnalek, J; Skalova, T; Petrokova, H; Vondrackova, E; Hradilek, M; Konvalinka, J; Soucek, M; Brynda, J; Fabry, M; Sedlacek, J; Hasek, J
On the role of the R configuration of the reaction-intermediate isostere in HIV-1 protease-inhibitor binding: X-ray structure at 2.0 angstrom resolution
ACTA CRYSTALLOGRAPHICA, 2006, D62(5), 489-497
SBGrid Data Bank: 729
PDB: 1ZSR
Duskova, J; Dohnalek, J; Skalova, T; Petrokova, H; Vondrackova, E; Hradilek, M; Konvalinka, J; Soucek, M; Brynda, J; Fabry, M; Sedlacek, J; Hasek, J
On the role of the R configuration of the reaction-intermediate isostere in HIV-1 protease-inhibitor binding: X-ray structure at 2.0 angstrom resolution
ACTA CRYSTALLOGRAPHICA, 2006, D62(5), 489-497
PDB: 1ZJ7
Skalova, T; Dohnalek, J; Duskova, J; Petrokova, H; Hradilek, M; Soucek, M; Konvalinka, J; Hasek, J
HIV-1 protease mutations and inhibitor modifications monitored on a series of complexes. Structural basis for the effect of the A71V mutation on the active site
JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49(19), 5777-5784
SBGrid Data Bank: 725
PDB: 1ZLF
Skalova, T; Dohnalek, J; Duskova, J; Petrokova, H; Hradilek, M; Soucek, M; Konvalinka, J; Hasek, J
HIV-1 protease mutations and inhibitor modifications monitored on a series of complexes. Structural basis for the effect of the A71V mutation on the active site
JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49(19), 5777-5784
SBGrid Data Bank: 721
PDB: 1YQ2
Skalova, T; Dohnalek, J; Spiwok, V; Lipovova, P; Vondrackova, E; Petrokova, H; Duskova, J; Strnad, H; Kralova, B; Hasek, J
Cold-active beta-galactosidase from Arthrobacter sp C2-2 forms compact 660 kDa hexamers: Crystal structure at 1.9 angstrom resolution JOURNAL OF MOLECULAR BIOLOGY, 2005, 353(2), 282-294
SBGrid Data Bank: 855
PDB: 1M0B
Petrokova, H; Duskova, J; Dohnalek, J; Skalova, T; Vondrackova-Buchtelova, E; Soucek, M; Konvalinka, J; Brynda, J; Fabry, M; Sedlacek, J; Hasek, J
Role of hydroxyl group and R/S configuration of isostere in binding properties of HIV-1 protease inhibitors
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2004, 271(22), 4451-4461
SBGrid Data Bank: 730
PDB: 1LZQ
Skalova, T; Hasek, J; Dohnalek, J; Petrokova, H; Buchtelova, E; Duskova, J; Soucek, M; Majer, P; Uhlikova, T; Konvalinka, J
An ethylenamine inhibitor binds tightly to both wild type and mutant HIV-1 proteases. Structure and energy study
JOURNAL OF MEDICINAL CHEMISTRY, 2003, 46(9), 1636-1644
SBGrid Data Bank: 720
PDB: 1IIQ
Dohnalek, J; Hasek, J; Duskova, J; Petrokova, H; Hradilek, M; Soucek, M; Konvalinka, J; Brynda, J; Sedlacek, J; Fabry, M
Hydroxyethylamine isostere of an HIV-1 protease inhibitor prefers its amine to the hydroxy group in binding to catalytic aspartates. A synchrotron study of HIV-1 protease in complex with a peptidomimetic inhibitor
JOURNAL OF MEDICINAL CHEMISTRY, 2002, 45(7), 1432-1438
SBGrid Data Bank: 728
PDB: 1FQX
Dohnalek, J; Hasek, J; Duskova, J; Petrokova, H; Hradilek, M; Soucek, M; Konvalinka, J; Brynda, J; Sedlacek, J; Fabry, M
A distinct binding mode of a hydroxyethylamine isostere inhibitor of HIV-1 protease
ACTA CRYSTALLOGRAPHICA, 2001, D57(3), 472-476
SBGrid Data Bank: 727