Current Schedule

Spring 2020
Wednesday (16:00 - 17:00)
Showing 12 items
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January 15, 2020 Organize meeting    
January 29, 2020 Ryan Bohlender Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test. Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. AJHG, 2011 Jul 15;89(1):82-93. doi: 10.1016/j.ajhg.2011.05.029:  https://www.ncbi.nlm.nih.gov/pubmed/21737059   
February 5, 2020 Group discussion Zhangchen Zhao, Wenjian Bi, Wei Zhou, Peter VandeHaar, Lars G. Fritsche, Seunggeun Lee. UK Biobank Whole-Exome Sequence Binary Phenome Analysis with Robust Region-Based Rare-Variant Test. AJHG, 2020 https://www.sciencedirect.com/science/article/pii/S0002929719304331  
February 12, 2020 cancel    
February 19, 2020 Swami Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR.MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3175618/  
February 26, 2020 Yanhong Zhou Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet, 2006. http://biostat.jhsph.edu/~iruczins/teaching/misc/2008.140.668/papers/price2006.pdf  
March 4, 2020 Shikun Wolf J, Barnard M, Xia X, Ryder N, Westra J, Tintle N. Computationally Efficient, Exact, Covariate-Adjusted Genetic Principal Component Analysis by Leveraging Individual Marker Summary Statistics from Large Biobanks. Pac. Symp Bio., 2020 https://psb.stanford.edu/psb-online/proceedings/psb20/Wolf.pdf  
March 11, 2020 Roger Hailiang Huang, Gina M. Peloso, Daniel Howrigan, Barbara Rakitsch, Carl Johann Simon-Gabriel, Jacqueline I. Goldstein, Mark J. Daly, Karsten Borgwardt, Benjamin M. Neale. Bootstrat: Population Informed Bootstrapping for Rare Variant Tests. bioRxiv, 2016.  https://www.biorxiv.org/content/10.1101/068999v1  
March 25, 2020  Spring break   
April 1, 2020 Yao Wang, X., Park, J., Susztak, K. et al. Bulk tissue cell type deconvolution with multi-subject single-cell expression reference. Nat Commun 10, 380 (2019).  https://doi.org/10.1038/s41467-018-08023-x  WebEX link https://mdacc.webex.com/mdacc/j.php?MTID=m0e06ef243935b96942dde673300859ac 
April 8, 2020 Ziqiao(move up to 2pm) Shen, R., Olshen, A. B., & Ladanyi, M. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics (Oxford, England), 25(22), 2906–2912 https://doi.org/10.1093/bioinformatics/btp543 Weblink https://mdacc.webex.com/mdacc/j.php?MTID=mcaf95b4d4fe839b86cb96ff70ea855c3 
April 22, 2020 Zuhal (2pm) Cao J, Zhou W, Steemers F, Trapnell C, Shendure J. Sci-fate characterizes the dynamics of gene expression in single cells. Nat Biotechnol. 2020 Apr 13. doi: 10.1038/s41587-020-0480-9 https://www.nature.com/articles/s41587-020-0480-9 WebEX link:https://mdacc.webex.com/mdacc/j.php?MTID=m5af19aa43f9fc59147a406f9a99a22c3 
Showing 12 items