The following list shows publications from data generated at SGF.


2014

Cajigas, I.J., Agosto A., Basabe B., Rodriguez E.N., Wilkinson M.F., and González C.I.  Sequences Downstream of a Premature Termination event are enhancers of the Saccharomyces cerevisiae NMD pathway RNA. under review MS#ID 005355

 

Cajigas, I.J., Guzzardo P., Agosto A., Gross T., Krebber H., Wilkinson M.F., and González C.I.  An Interplay Between the Nuclear-Cytoplasmic Shuttling Protein Mex67p and Upf1p promotes translation. MCB under review MS#ID MCB01623-09

 

Mashanov VS, Zueva OR, García-Arrarás JE. Transcriptomic changes during regeneration of the central nervous system in an echinoderm. BMC Genomics. 2014 May 12;15:357. doi: 10.1186/1471-2164-15-357. PubMed PMID: 24886271 PMID: PMC4229883.

 

Mashanov VS, Zueva OR, García-Arrarás JE. Expression of pluripotency factors in echinoderm regeneration. Cell Tissue Res. 2015 Feb;359(2):521-36. Epub 2014 Dec 3. DOI: 10.1007/00441-014-2040-4 PMID: 25468557.

 

Mosquera-Espinosa A. T., Bayman P, Prado G, Gómez-Carabalí A, Otero JT.  2013  The double life of Ceratobasidium: orchid mycorrhizal fungi and their potential for biocontrol of Rhizoctonia solani sheath blight of rice. Mycologia 105(1): 141-150 PMID: 22962357

 

Ramírez-Camejo LA, Torres-Ocampo AP, Agosto-Rivera JL, Bayman P. 2014. An opportunistic human pathogen on the fly: Strains of Aspergillus flavus vary in virulence in Drosophila melanogaster. Medical Mycology 52: PMID: 24577003

 

Toledo-Hernandez C, VelezZuazo X, Ruiz CP et al. 2014. Population ecology and genetics of the invasive lionfish in Puerto Rico. Aquatic Invasions 9: 227237 [pdf available here]

 

Velez-Zuazo X, AlfaroShigueto J, Mangel J, Papa R, Agnarsson I. 2014. What barcoding reveals about the shark fishery in Peru. Fisheries Research 161:3441 DOI:10.1016/j.fishres.2014.06.005

 

2013

Santiago, T., Toranzos, G., Bayman, P., Massey, S.E., Cano, R. 2013 Sociomicrobiome of wood decay in a tropical rain forest: unraveling complexity. SpringerPlus 2, 435. DOI: 10.1186/2193-1801-2-435

 

Toledo-Hernández C., Gulis V., Ruiz-Díaz C.P., Sabat A.M., Bayman P.  2013  When aspergillosis hits the fan: disease transmission and fungal biomass in diseased versus healthy sea fans (Gorgonia ventalina).  Fungal Ecology 6(2): 161-167 DOI: 10.1016/j.funeco.2012.11.002

 

2012

Belay, D. K., Huckaba, R.M., Ramirez, A.M., Rodrigues, J.C.V., Foster, J.A. 2012  Insecticidal control of Bemisia tabaci (Hemiptera: Aleyrodidae) transmitting Carlavirus on Soybeans and detection of the virus in alternate hosts.  Journal of Crop Protection 35: 53-57 DOI: 10.1016/j.cropro.2011.12.020

 

Mashanov, V.S., Zueva, O.R., Garcia-Arraras, J.E.  2012   Posttraumatic regeneration involves differential expression of long terminal repeat (LTR) retrotransposons.  Dev Dyn 241: 1625-1636 PMID: 22911496

 

Mashanov, V.S.,  Zueva, O.R., Garcia-Arraras, J.E.  2012  Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber gut regeneration. Gene Expr Patterns 12: 24-35 PMCID: PMC3272084

 

McPhail-Medina, R., L., Wessel-Beaver, J.C.V. Rodrigues.  2012  Inheritance of resistance to Papaya ringspot virus in tropical pumpkin is controlled by at least two genes.  In. Sari, N., Solmaz, I., Aras, V. (ed.) Cucurbitaceae.  Proceedings of the Xth EUCARPIA meeting on genetics and breeding of Cucurbitaceae, Antalya (Turkey).  Pp. 679-701 ISBN: 978-605-63297-0-8 [pdf available here]

*Generated with Sanger Sequencing & NGS*

 

Patricio AR, Herbst LH, Duarte A, Velez-Zuazo X, Santos Loureiro N, Pereira N, Tavares L and GA Toranzos. 2012. Phylogeography and Evolution of the Chelonid Fibropapillomaassociated Herpesvirus. Journal of General Virology. DOI: 10.1099/vir.0.0389500 PMID: 22258862

*This study used Sanger Sequencing data generation with an ABI-3130xl.*


Rivera-Rivera, C., Galino-Cardona, A., Rodrigues. J.C.V. 
2012  Testing prey DNA fingerprinting on Amblyseius largoensis (Acari: Phytoseiidae) predation of Raoiella indica (Acari: Tenuipalpidae).  Experimental and Applied Acarology  57: 3-4 PMID: 22476445 

 

Rodrigues, J.C.V., Quintero-Lopez, I., Wessel-Beaver, L.  2012  Potyviridae as a major challenge to growing cucurbits in Puerto Rico.  In. Sari, N., Solmaz, I., Aras, V. (ed.) Cucurbitaceae Proceedings of the Xth EUCARPIA meeting on genetics and breeding of Cucurbitaceae, Antalya (Turkey).  Pp. 786-790 PAN 20133109816

*Generated with Sanger Sequencing & NGS*

 

2010

Agnarsson, I.  2010  The utility of ITS2 in spider phylogenetics: notes on prior work and an example from Anelosimus.  Journal of Arachnology 38: 377-382 DOI: 10.1636/B10-01.1

*Generated with Sanger Sequencing*

 

Agnarsson, I., Avilés L, Maddison W.P.  2010  Complete separation along matrilines in a social spider metapopulation inferred from hypervariable mitochondrial DNA region.  Molecular Ecology 19(15): 3052-3063 PMID: 20598078

*Generated with Sanger Sequencing*

 

Bayman, P., Mosquera-Espinosa A.T., Porras-Alfaro A.  2010  Mycorrhizal relationships of Vanilla: specificity and protectin Vanilla.  Technology and Management, Havkin-Frenkel D, Belanger F, eds., Wiley. Ch. 16 Pp. 266-280 DOI: 10.1002/9781444329353.ch16

*Generated with Sanger Sequencing*

 

Mashanov, V.S., Zueva, O.R., C. Rojas-Cartagena, Garcia-Arraras, J.E.  2010  Visceral regeneration in a sea cucumber involves extensive expression of survivin and mortalin homologs in the mesothelium.  BMC Dev Biol 10(1): 117 PMID: 21114850

*Generated with Sanger Sequencing & NGS*

 

McPhail-Medina, R., L., Wessel-Beaver, J.C.V. Rodrigues.  2010  Papaya ringspot virus resistance in selected F2:3 Families of tropical pumpkin does not support a single recessive gene model.  In. Thies, J.A., Kousik, S., Levi, A. (ed.) Cucurbitaceae ASHS Press, Ameri. Soc. Hort. Sci., Alexandria, VA. Pp. 6-9 [corresponding author: jose_carlos@mac.com]

*Generated with Sanger Sequencing Data*

 

Rodrigues, J.V.,  Vitorelli, A., Ramirez, A.  2010  Association of a phytoplasma with dieback in palms in Puerto Rico confirmed by nested-PCR assays.  Phytopathology 100: S110 [corresponding author: jose_carlos@mac.com]

*Generated with Sanger Sequencing Data*

 

Zuluaga-Montero, A., Camejo L., Rauscher J., Bayman P.  2010  Marine isolates of Aspergillus flavus: denizens of the deep or lost at sea?  Fungal Ecology 3(4): 386-391 PMC2976972

*Generated with Sanger Sequencing Data*

 

Zuluaga-Montero, A., Toledo-Hernandez C., Rodriguez J.A., Sabat A., Bayman P.  2010  Spatial variation in the fungal community isolated from healthy and diseased sea fans (Gorgonia ventalina) and seawater.  Aquatic Biology 8: 151-160 DOI: 10.3354/ab00218

*Generated with Sanger Sequencing Data*

 

2009

Blackledge, T.A., Coddington J., Scharff N., Szuts T., Wenzel J., Hayashi C., Agnarsson I.  2009  Reconstructing web evolution and spider diversification in the molecular era.  PNAS 106: 5229-5234 DOI: 10.1073/pnas.0901377106 PMCID: PMC2656561

*Generated with Sanger Sequencing Data*

 

Estrella, L.A., Wilkinson, M.F.  2009  The shuttling protein Npl3p promotes translation termination accuracy in Saccharomyces cerevisiae.  Journal of Molecular Biology 394: 410-422 PMID: 19733178

*Generated with Sanger Sequencing Data*

 

McPhail-Medina, R. L., Wessel-Beaver, Rodrigues, J.C.V.  2009  Inheritance of Papaya Ringspot Virus resistance in temperate and tropical genotypes of pumpkin. HortScience 44(4): 1157-1158 [available through here]

*Generated with Sanger Sequencing Data*

 

Otero, J.T., Bayman P.  2009  Germinación simbiotica y asimbiotica de semillas de orquideas epifitas.  Acta Agronómica 58: 270-276  [pdf available here]

*Generated with Sanger Sequencing Data*

 

Toledo-Hernandez, C., Yoshiyoka P., Bayman P., Sabat A.  2009  Impact of disease and detachment on growth and survival of sea fans Gorgonia ventalina.  Marine Ecology Progress Series 393: 47-54 DOI: 10.3354/meps08238

*Generated with Sanger Sequencing Data*

 

2008

Hrbek, T., Farias, I. P.  2008  The complete mitochondrial genome of pirarucu (Arapaima gigas, Arapaimidae, Osteoglossiformes).  Genetics and Molecular Biology 31(1): 293-302 (suppl) DOI: 10.1590/S1415-47572008000200024

*Generated with Sanger Sequencing Data*

 

Toffoli, D., Hrbek, T., Araujo, M. L. G., Almeida, M. P., Charvet-Almeida, P., Farias, I. P.  2008  A test of the utility of DNA barcoding in the radiation of the freshwater stingray genus Potamotrygon (Potamotrygonidae: Myliobatiformes).  Genetics and Molecular Biology 31(1): 324-336 DOI: 10.1590/S1415-47572008000200028

*Generated with Sanger Sequencing Data*

 

2007

Fantin, C., Carvalho, C. F., Hrbek, T., Sites Jr., J. W., Monjelo, L. A., Astolfi-Filho, S., Farias, I. P.  2007  Microsatellite DNA markers for Podocnemis unifilis, the endangered yellow-spotted Amazon River turtle.  Molecular Ecology Notes 7(6): 1235-1238 DOI: 10.1111/j.1471-8286.2007.01842.x

*Generated with SGF's ABI-3130xl*

 

Farias, I. P., Hrbek, T.  2007  Patterns of diversification and speciation in the discus fish (Symphysodon spp. Cichlidae) of the Amazon basin.  Molecular Ecology 49(1): 32-43 PMID: 18762435

*Generated with Sanger Sequencing Data*

 

Hrbek, T., Seckinger, J., Meyer, A.  2007  A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes.  Molecular Phylogenetics and Evolution 43(3): 986-998 PMID: 17185005

*Generated with Sanger Sequencing Data*

 

Porras, A., Bayman, P.  2007  Mycorrhizal fungi of Vanilla: specificity, phylogeny and effects on seed germination and plant growth.  Mycologia 99(4): 510-525 PMID: 18065002

*Generated with Sanger Sequencing Data*

 

Rosenthal, J., Colina C., DeGiorgis J.A., Srikumar D, Iruku N, and Holmgren M.  2007  Structural basis of Na+/K+-ATPase adaptation to marine environments.  Nature Structural and Molecular Biology 14(5): 427-431 PMID: 17460695

*Generated with Sanger Sequencing Data*

 

2006

Bennett, S., Holmes E. C., Chirivella M., Rodriguez D.M., Beltran M., Vorndam V., Gubler D.J., and McMillan W.O.  2006  Molecular evolution of dengue 2 in Puerto Rico: selection in envelope accompanies reintroduction.  Journal of General Virology 87(Pt4): 885-893 PMID: 16528038

*Generated with Sanger Sequencing Data*

 

Bull, V., Beltrán M., Bermingham  E., Jiggins C.D., McMillan W.O., and Mallet J.  2006  Polyphyly and gene flow between non-sibling Heliconius species.  BMC-Biology 4: 11 DOI: 10.1186/1741-7007-4-11

*Generated with Sanger Sequencing Data*

 

Cerón-Souza, I., Rivera-Ocasio E., Funk S.M., and McMillan W.O.  2006  Development of six microsatellite loci for black mangrove Avicennia germinans.  Molecular Ecology Notes 6(3): 692-694 DOI: 10.1111/j.1471-8286.2006.01312.x

*Generated with SGF ABI-3130xl*

 

Joron, M., Jiggins C. J. D., Papanicolaou A., and McMillan W.O.  2006  Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity.  Heredity 97(3): 157-167 PMID: 16835591

*Generated with Sanger Sequencing Data*

 

Kapan, D. D., Flanagan N.S., Tobler A., Reed R., Acevedo Gonzalez J., Ramirez Restrepo M., Martinez L., Maldonado K., Ritschoff C., Heckel D.G., and McMillan W.O.  2006  Localization of Müllerian mimicry genes on a dense linkage map of Heliconius erato.  Genetics 173(2): 735-757 PMID: 16489214

*Generated with Sanger Sequencing Data*

 

Ramirez, M., Acevedo J.P., Planas S., Carlin J. L., Funk S.M., and McMillan W.O.  2006  New microsatellite resources for groupers (Serranidae).  Molecular Ecology Notes 6(3): 813-817 DOI: 10.1111/j.1471-8286.2006.01354.x

*Generated with Sanger Sequencing Data*

 

Data Generated with the ABI 377 and ABI 3130xl prior SGF formation
2005

Jiggins, C. D., Mavarez J., Beltrán M., McMillan W.O., JohnsonS., and Birmingham E.  2005  A genetic linkage map of the mimetic butterfly, Heliconius melpomene.  Genetics 171(2): 557-570 PMID: 15489522

*Generated with Sanger Sequencing Data*

 

Otero, J.T., Ackerman J.D., Bayman P.  2005  Variation in mycorrhizal performance in the epiphytic orchid Tolumnia variegata in vitro: the potential for natural selection.  Evolutionary Ecology 19: 29-43 DOI: 10.1007/s10682-004-5441-0

*Generated with Sanger Sequencing Data*

 

Papanicolaou,  A., Joron M. , McMillan W.O., Blaxter M.L., and Jiggins C.  2005  Genomic tools and cDNA derived markers for butterflies.  Molecular Ecology 14: 2883-2897 PMID: 16029486

*Generated with Sanger Sequencing Data*

 

Santamaria, J., Bayman P.  2005  Fungal epiphytes and endophytes of coffee leaves (Coffea arabica).  Microbial Ecology 50(1): 1-8 PMID: 16132426

*Generated with Sanger Sequencing Data*


Tobler, A., Kapan D., Flanagan N. , Johnson S., Heckel D., Jiggins C., and McMillan W. O.  2005  First-generation linkage map of the warningly colored butterfly Heliconius erato.  Heredity 94(4): 408-417 PMID: 15592446

*Generated with Sanger Sequencing Data*


2004

Otero, J.T., Ackerman J.D., Bayman P.  2004  Differences in mycorrhizal specificity between two tropical orchids.  Molecular Ecology 13(8): 2393-2404 PMID: 15245412 PMID: 16528038

*Generated with Sanger Sequencing Data*

 

2003

Bennett S, Holmes E, Chirivella M, Rodriguez D, Beltran M, Vorndam V, Gubler D, McMillan W. Selection-driven evolution of emergent dengue virus. Mol Biol Evol. 2003; 20(10):1650–1658.PMID: 12832629 

The authors used data generated with an ABI-377 Sanger Sequencing Genetic Analyzer located at the SGF.