This page is the new stable home for the SLiMSuite and SeqSuite packages of open-source bioinformatics program. Details of these programs can be found at the download site: http://www.soton.ac.uk/~re1u06/software/packages/.  More up-to-date information may be available from the SeqSuite blog.
 

SLiMSuite

  • SLiMSuite motif discovery software
  • Updated SLiMSuite download available The latest version of SLiMSuite software can now be accessed and downloaded from: http://www.soton.ac.uk/~re1u06/software/packages/slimsuite/index.html. 
    Posted 16 Apr 2012, 06:32 by RJE Software
  • QSLiMFinder poster now up on F1000 posters Benchmarking of QSLiMFinder is almost finished and the paper is well on its way to publication. If you want a sneak preview at the general idea, a poster from the ...
    Posted 16 Apr 2012, 06:30 by RJE Software
  • The new SLiMSuite page is up The latest version of SLiMSuite software can now be accessed and downloaded from: http://www.soton.ac.uk/~re1u06/software/packages/slimsuite/index.html. The page (and the documentation) will ...
    Posted 30 Nov 2011, 09:27 by RJE Software
  • SLiMSuite web presence The SLiMSuite package is currently undergoing an overhaul. Details will appear with time. (Hopefully not too much time!)
    Posted 25 Nov 2011, 04:06 by RJE Software
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SeqSuite

  • SeqSuite DNA/Protein sequence tools
  • Update SeqSuite download available The latest version of SeqSuite software can now be accessed and downloaded from: http://www.soton.ac.uk/~re1u06/software/packages/seqsuite/index.html. 
    Posted 16 Apr 2012, 06:32 by RJE Software
  • The new SeqSuite package is now available The latest version of SeqSuite software can now be accessed and downloaded from: http://www.soton.ac.uk/~re1u06/software/packages/seqsuite/index.html. The page (and the documentation) will ...
    Posted 30 Nov 2011, 09:29 by RJE Software
Showing posts 1 - 2 of 2. View more »

RJESuite

  • RJESuite general python programming tools
  • Updated RJESuite download available The new University of Southampton pages for the RJE software modules are available at http://www.soton.ac.uk/~re1u06/software/packages/index.html. 
    Posted 16 Apr 2012, 06:33 by RJE Software
  • The new RJESuite pages are now active The new University of Southampton pages for the RJE software modules are available at http://www.soton.ac.uk/~re1u06/software/packages/index.html. News of further updates will appear ...
    Posted 30 Nov 2011, 09:31 by RJE Software
Showing posts 1 - 2 of 2. View more »

Publications

  • Associated publication news
  • Interactome-wide prediction of short, disordered protein interaction motifs in humans Edwards RJ, Davey NE, O'Brien K & Shields DC (2012): Interactome-wide prediction of short, disordered protein interaction motifs in humans. Molecular Biosystems 8: 282-95. [Mol. BioSyst.] [PubMed] [PDF ...
    Posted 13 Apr 2012, 07:05 by Richard Edwards
  • SLiMSearch 2.0: biological context for short linear motifs in proteins Davey NE, Haslam NJ, Shields DC & Edwards RJ (2011): SLiMSearch 2.0: biological context for short linear motifs in proteins. Nucleic Acids Research 39: W56-W60. [Nucleic Acids Res.] [PubMed ...
    Posted 13 Apr 2012, 07:03 by Richard Edwards
  • Shotgun Proteomic Analysis of Emiliania huxleyi, a Marine Phytoplankton Species of Major Biogeochemical Importance Jones BM*, Edwards RJ*, Skipp PJ, O'Connor CD & Iglesias-Rodriguez MD (2011): Shotgun Proteomic Analysis of Emiliania huxleyi, a Marine Phytoplankton Species of Major Biogeochemical Importance. Marine Biotechnology 13 ...
    Posted 13 Apr 2012, 07:03 by Richard Edwards
  • SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context Davey NE, Haslam NJ, Shields DC & Edwards RJ (2010): SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context. In: Pattern Recognition in Bioinformatics ...
    Posted 13 Apr 2012, 07:02 by Richard Edwards
  • Computational identification and analysis of protein short linear motifs Davey NE, Edwards RJ & Shields DC (2010): Computational identification and analysis of protein short linear motifs. Frontiers in Bioscience 15: 801-25. [Front Biosci.] [PubMed] [PDF] Short linear motifs (SLiMs ...
    Posted 13 Apr 2012, 06:44 by Richard Edwards
Showing posts 1 - 5 of 16. View more »