Links to Receptor-Ligand Binding Related Websites

Computational Websites and Tools for Predicting Receptor Ligand Binding

Tool or Website

URL

AutoDock

http://autodock.scripps.edu/

CLiBE

http://xin.cz3.nus.edu.sg/group/CLiBE/CLiBE.asp

DOCK

http://dock.compbio.ucsf.edu/

Ligand Protein Database

http://lpdb.chem.lsa.umich.edu/

LigBase

http://modbase.compbio.ucsf.edu/ligbase/

LIGPLOT

http://www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html

MOAD

http://www.bindingmoad.org/

Relibase

http://Relibase.rutgers.edu

 

 

Databases Containing Receptor-Ligand Binding Information

Tool or Website

URL

The Binding Database

http://www.bindingdb.org/bind/index.jsp

Database of Interacting Proteins

http://dip.doe-mbi.ucla.edu/dip/DLRP.cgi

Pattern Recognition Receptor Database

http://www.imtech.res.in/raghava/prrdb/info.html

PDSP Database

http://pdsp.med.unc.edu/pdsp.php

Protein DataBank

http://www.pdb.org

 

 

 

G Protein Coupled Receptor Specific Websites

Website

URL

GPCRDB

http://www.gpcr.org/

GRAP

http://www.cmbi.ru.nl/tinygrap/credits/

GPCR Pattern Recognition

http://www.biochem.ucl.ac.uk/bsm/dbbrowser/GPCR/

Viseur Program

http://icbtools.med.cornell.edu/viseur/viseur.html

Olfactory Receptor Database

http://senselab.med.yale.edu/ordb/

Cytokine Signaling Pathway Database

http://cytokine.medic.kumamoto-u.ac.jp/

Center for Opioid Research and Design

http://www.opioid.umn.edu/

 

 

Resources Dedicated to Nuclear Receptors

Resource

URL

Nuclear Receptor Resource

http://nrr.georgetown.edu/NRR/NRR1.html

Androgen Receptor Mutations

http://androgendb.mcgill.ca/

Estrogen Receptor Resource

Glucocorticoid Resource

http://nrr.georgetown.edu/GRR/grr1.htm

PPAR Resource

http://ppar.cas.psu.edu/

Steroid Receptor Resource

http://nrr.georgetown.edu/NRR/srapr/srapr.html

Thyroid Receptor Resource

http://nrr.georgetown.edu/NRR/TRR/trrfront.html

Vitamin D Receptor Resource

http://vdr.bu.edu/

NucleaRDB:  An Information System for Nuclear Receptors

http://www.receptors.org/NR/

Nuclear Receptor Mutation Database

http://www.receptors.org/cgi-bin/nrmd/nrmd.py

Photoreceptor Nuclear Receptor Database

NOT CURRENTLY ACTIVE

 Nuclear Receptor Super Family Ligands Database (NORSE)

 http://doolittle.ibls.gla.ac.uk/~1007871b/Akshay/NORSE/index2.html

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