Statement of Purpose

Programming Examples

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Python Examples

Examples of my coding experience with python. Below are links to several examples of code which I have utilized to analyze large datasets and integrate public information.

Also please visit my github account to see what I have been working on lately:  http://github.com/cplaisier

 

Python Scripts

  • analyzeUSF1OE.py   5k - Jul 22, 2009, 10:53 AM by Chris Plaisier (v1)
    ‎Differential expression analysis of USF1 overexpression experiment that identifies downstream targets of USF1‎
  • computingOverlapMatrix.py   1k - Jul 22, 2009, 10:54 AM by Chris Plaisier (v2)
    ‎Creates a matrix describing the overlap of the elements of files with EntrezIDs ‎
  • probesPerProbeset.py   1k - Jul 21, 2009, 12:45 PM by Chris Plaisier (v1)
    ‎Creates a file from a maskerncinihgov probe tab text file that contains the probes per probeset‎
  • analyzeMicroarrayDataV3.py   16k - Mar 9, 2009, 5:09 PM by Chris Plaisier (v1)
    ‎A Python script to analyze microarray data and output a comma separated file with the results. Also uses Rpy and the R package kinship.‎
  • pedigreeDelHMM.py   25k - Mar 9, 2009, 4:58 PM by Chris Plaisier (v1)
    ‎A program still in development to detect human CNV deletions using genotype data via a Hidden Markov Model (HMM).‎
  • plotCausalGenes.py   8k - Mar 9, 2009, 4:55 PM by Chris Plaisier (v1)
    ‎Plots genomic regions of Kathiresan et al, 2009 data to a PDF using Python and Rpy.‎
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