Data & Protocols‎ > ‎

Fern_plastome_list

Here is a list of fern plastomes published in genbank. You can downoad the csv from bottom of page. The list includes complete plastomes as well as fragments greater than 10 kb. This list is based on a search using a Biopython script written by Carol Rowe and Paul Wolf, then rewritten in R by Tanner Robison Sept 2018.

Please email me at paul.wolf@usu.edu if you want me to add taxa "in progress", or if you know of GenBank entries that are not listed below, or you want email notification of updates. Thanks.

Last updated 26 November 2018: 130 plastomes
         Species                                                Accession                                     URL

Plastomes in progress
By Jeff Mower, University of Nebraska, Lincoln:
Thelypteris palustris
Osmunda regalis
Gleichenia dicarpa

Jin_mei Lu and collaborators are working on 250+ plastomes in Polypodiales
plus filling in gaps from currently unsampled fern families. 

In progress by Samuli Lehtonen:
Trichomanes trollii GenBank MH348274 (not yet public in GenBank)
    and with collaborators the following in progress:
Davallia fejeensis
Lindsaea linearis
Lomariopsis japurensis
Nephrolepis biserrata
Oleandra articulata
Pecluma dulce
Saccoloma inaequale
Tectaria panamensis
Christensenia aesculifolia
Danaea sellowiana
Eupodium kaulfussii
Ptisana novoguineensis
Marattia cicutifolia
Marattia laxa


Page hits since Oct 2017:conter12
ċ
all_fern_plastomes.csv
(12k)
Paul Wolf,
Dec 3, 2018, 4:24 PM