In the common vernacular, roots are plant organs that grow underground and function to absorb water and anchor the plant. Unfortunately, this is not a complete or specific definition when dealing with the plant kingdom and the fossil record. There are other organs that can be found underground and can perform those functions. In addition, these features can be difficult to ascertain in the fossil record. Below is more detail regarding how botanists of extant and extinct plants define roots.
Branching systems that are frequently underground and grow in a positively gravitropic manner (towards gravity)
There are roots that can grow above ground (e.g., epiphytic orchids, prop roots, buttress roots, etc.)
They have endogenous branching, in which the pericycle creates lateral roots inside the root and then emerges by growing through the cortex and epidermis
Roots possess a layer of cells called a root cap, which protects the root apical meristem
Roots tend to be hydrotropic, growing towards sources of water
They possess an endodermis, which is a layer of thickened cells that regulates the movement of water into the vascular system
Rhizomes are stems or stem-like axes (not roots) that creep horizontally along the ground; They grow diagravitropically (perpendicular to gravity)
They produce adventitious roots that anchor the plant to the ground
They can also produce leaves that grow upwards from the rhizome (e.g., ferns). Roots do not produce leaves.
Rhizomes branch through exogenous buds. They do not exhibit endogenous branching
They do not possess root caps, even though some grow underground
Rhizoids are more similar to root hairs but are not roots because they lack vascular tissue
Like roots, they can absorb water and minerals and anchor small plants to the ground
Most early land plants, including the bryophytes, possess rhizoids.
Silurian zosterophylls
The earliest root-like structure comes from Silurian zosterophylls (e.g., Bathurstia †)
This plant possessed K-type branching, in which an axis dichotomizes two times in close succession
The first dichotomy has an axis that bifurcates pseudomonopodially, continuing the progression of the rhizome.
The other axis bifurcates again in an isotomous manner, creating two new axes: a new, larger, circinate aerial shoot growing upwards and a thinner root axis growing downwards (positively gravitropic).
These structures are “rooting organs” but missing some attributes of true roots: lacking a root cap or root hairs (Gensel et al., 2001) and producing new roots exogenously
Early Devonian clubmosses
An evolution of rooting systems also appears in Early Devonian lycopsids (e.g., Asteroxylon †)
These plants possessed root-bearing axes they grow in a positively gravitropic direction. These root-bearing axes bear quasi-roots
Root-bearing axes are not roots, since they also possess an epidermis and cuticle, occasional stomata, and scale-like enations.
Quasi-roots are similar to the roots of living lycopsids (Hetherington et al., 2021) but lack root hairs and root caps. In addition, they are weakly gravitropic, growing in many directions within the soil, but they probably did the bulk of the absorption for the plant.
Given the evidence from both zosterophylls and early clubmosses, it appears that lycophyte roots evolved from the branching of their shoot systems, with one axis evolving into a root-bearing axis, as we see in K-branching (Gensel et al., 2001).
From these root-bearing organs evolved roots with features such as root caps, hairs, a pericycle, and an endodermis.
Some living lycophytes, such as spikemosses (Selaginella), still possess a root-bearing organ called a rhizophore, from which true roots arise endogenously (Mello et al., 2018).