March 2017: This one should ease the applications of our previous work with James Lynch on stochastic simulation fluxes by introducing a simple algorithm that extends Gillespie's direct method.
th International Conference on Algorithms for Computational Biology
AlCoB 2017, Aveiro, Portugal, June 5-6, LNCS, Springer, to appear.
Among 100 most viewed articles of 2014 at BMC Systems Biology.
March 2017: Back to the future: I could finally put together some new ideas on old thoughts.
, to appear.
January 2017 - Federico's PhD work is now published at the Nature Scientific Reports Journal.
[ Keywords: Computational Biology, Systems Biology, Modelling, Ceramides, Insulin resistance ]
October 2017 - With Cansu (left) and Martin (right), we participated in our European project meeting in Venice on Living Architecture (LIAR). And then again we met in Madrid at the Spanish National Research Council (CSIC) with a hands-on workshop in synthetic biology.
LIAR is a modular bioreactor-wall, which is based on the operational principles of microbial fuel cell technology and synthetic ‘consortia’ of microbes. The project establishes:
• Foundational concepts through which ‘designed’ metabolisms can computationally process, recycle, remediate and synthesize valuable compounds from waste water.
• Transferable principles by which synthetic ecosystems can shape the environmental performance of our living spaces to increase our health, productivity and ecosystems impact.
• New standards for synthetic ‘ecosystems’ through consortia design, engineering and optimization.
December 2016 - Some ideas on merging modeling technologies at different biological levels on a single platform.
5th International Conference on the Theory and Practice of Natural Computing
TPNC 2016, Sendai, Japan December 12-13, LNCS 10071, Springer, 2016.
We are visiting with the conference crowd one of the monuments of Sendai overlooking the city.
August 2016: Is it possible to look at proofs as truly-concurrent processes? Yes, and this can also mean faster proof search.
WoLLIC 2016, August 16-19, 2016, Puebla, Mexico, Springer, 2016.
Ozan Kahramanoğulları, Luca Cardelli
Process Modeling and Rendering of Biochemical Structures: Actin.