Publications

open-expression

  • Helena Deus, Jun Zhao, Satya Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M.Scott Marshall, and Kei-Hoi Cheung. Provenance of microarray experiments for a better understanding of experiment results. In Proceedings of The Second International Workshop on the role of Semantic Web in Provenance Management, Shanghai, China, 2010. [ bib ]
  • Alistair Mile, Jun Zhao, Graham Klyne, David Shotton, and Helen White-Cooper. Openflydata: An exemplar data web integrating gene expression data on the fruit fly drosophila melanogaster. Journal of Biomedical Informatics, 2010. To appear. [ bib ]
  • Jun Zhao, Graham Klyne, Alistair Miles, Elizabeth Benson and Elin Gudmannsdottir, Helen White-Cooper, and David Shotton. Flyted: the drosophila testis gene expression database. Nucle. Acid (Database Issue 2010), (38):D710-D715. doi:10.1093/nar/gkp1006. [ bib ]
  • Jun Zhao, Alistair Miles, Graham Klyne, and David Shotton. Openflydata: The way to go for biological data integration. In The Sixth International Workshop of Data Integration in the Life Sciences, pages 47-54, Manchester, UK, 2009. http://www.springerlink.com/content/jn41378l3426j104/fulltext.pdf. [ bib ]

open-medicine

  • Joann S. Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, M. Scott Marshall, James P. McCusker, Deborah L. McGuinness, James McGurk, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, and Michel Dumontier. The translational medicine ontology: Driving personalized medicine by bridging the gap from bedside to bench. Journal of Biomedical Semantics (Bio-Ontologies 2010 Special Issue), 2011. To appear. [ bib ]
  • Jun Zhao. Publishing traditional chinese medicine knowledge as linked data on the web. Journal of Chinese Medicine, Special Issue on Semantic Web for Chinese Medicine, 2010. To appear. [ bib ]
  • Matthias Samwald, Michel Dumontier, Jun Zhao., Joanne Luciano, M. Scott Marshall, and Kei Cheung. Integrating findings from traditional medicine into modern pharmaceutical research through semantic technologies. Journal of Chinese Medicine, Special Issue on Semantic Web for Chinese Medicine, 2010. To appear. [ bib ]
  • Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, and Bo Andersson. Linking open drug data. In Triplification Challenge 2009, Graz, Austria, 2009. First Prize in the iTriplification Challenge, http://blog.aksw.org/2009/triplification-challenge-2009-winners/. [ bib | .pdf ]
  • Jun Zhao, Anja Jentzsch, Matthias Samwald, and Kei-Hoi Cheung. Linked data for connecting traditional chinese medicine and western medicine. In The Sixth International Workshop of Data Integration in the Life Sciences (Poster&Demo), Manchester, UK, 2009. [ bib | .pdf ]

Janus provenance Web

  • Jun Zhao, Satya Sahoo, Paolo Missier, Amit Sheth, and Carole Goble. Extending semantic provenance into the web of data. IEEE Internet Computing, 15(1):40-48, 2011. [ bib ]
  • Paolo Missier, Satya Sahoo, Jun Zhao, Carole Goble, and Amit Sheth. Janus : from workflows to semantic provenance and linked open data. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
  • Marco Roos, Sean Bechhofer, Jun Zhao, Paolo Missier, David R. Newman, David De Roure, and M. Scott Marshall. A linked data approach to sharing workflows and workflow results. In Proc. of Fourth International Symposium On Leveraging Applications of Formal Methods, Verification, and Validation, volume 6415/2010, pages 340-354, Amirandes, Greece, 2010. [ bib ]

Trust of data

  • Olaf Hartig and Jun Zhao. Publishing and consuming provenance metadata on the web of linked data. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
  • Li Ding, Jie Bao, James Michaelis, Jun Zhao, and Deborah L. McGuinness. Reflections on provenance ontology encodings. In Proceedings of The third International Provenance and Annotation Workshop, Troy, NY, U.S.A, 2010. [ bib ]
  • Olaf Hartig and Jun Zhao. Integrating provenance into the web of data. In Proceedings of the Poster Session at the 7th Extended Semantic Web Conference (ESWC), Heraklion, Greece, 2010. [ bib ]
  • Olaf Hartig and Jun Zhao. Using web data provenance for quality assessment. In International Workshop on Semantic Web and Provenance Management, Washington D.C., USA, 2009. http://purl.org/net/provenance/. [ bib ]
  • Jun Zhao, Alistair Miles, and David Shotton. Linked data and provenance in biological data webs. Briefings in Bioinformatics, (2):139-152, 2009. [ bib ] 2008

web-of-data-reuse

TBD

Others

  • Jun Zhao, Oscar Corcho, Paolo Missier, Khalid Belhajjame, David Newman, David de Roure, and Carole A. Goble. Chapter:eScience. Handbook of semantic web technologies, 2011. [ bib ]
  • Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. Describing linked datasets with the void vocabulary, 2011. W3C Interest Group Note 03 March 2011. [ bib | http ]
  • Jun Zhao, Chris Bizer, Yolanda Gil, Paolo Missier, and Satya Sahoo. Provenance requirements for the next version of rdf. In W3C RDF Next Steps, Palo Alto, CA U.S.A, 2010. [ bib ]
  • D.De Roure, C.Goble, S.Aleksejevs, S.Bechhofer, J.Bhagat, D.Cruickshank, P.Fisher, N. Kollara, D. Michaelides, P. Missier, D. Newman, M. Ramsden, M. Roos, K. Wolstencroft, E. Zaluska, and J. Zhao. The evolution of myexperiment. pages 153-160, Brisbane, Australia, 2010. [ bib ]
  • Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, and Adrian Paschke. A journey to semantic web query federation in life sciences. BMC Bioinformatics, 10:S10, 2009. [ordered by author]. [ bib ]
  • Keith Alexander, Richard Cyganiak, Michael Hausenblas, and Jun Zhao. Describing linked datasets. In Linked Data on the Web Workshop in the International World Wide Web Conference, Madrid, Spain, 2009. http://events.linkeddata.org/ldow2009/papers/ldow2009_paper20.pdf. [ bib ]
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