Non-Model Genomics Journal Club - Fall 2020

This journal club is a venue for learning about recent research using genomic tools to address ecological and evolutionary questions in non-model organisms (i.e. species that have not been selected by large research communities for extensive study), exploring new techniques and applications to your own data, and sharing experiences and knowledge about application of genomics to non-model systems.

Make sure you are receiving email announcements! To join, send an email to NONMOD-GEN-JC-L-request@cornell.edu with subject "join" and leave message body blank.

Instructor:  Kelly R. Zamudio (krz2@cornell.edu) and Cinnamon Mittan (csm259@cornell.edu)

When: Fridays 11:00-12:00 pm   Where ZOOM! (our seminar will be remote this semester)

Fall 2020 Meeting Calendar

 Date Discussion LeaderPaper
 Sep 4 2020Organizational Meeting
Sept 11EveryoneSingle slide Lightening Topic Intros. 1 slide and 3 minutes each! Upload your slide at https://docs.google.com/presentation/d/1YgaKxijfWOZ9c9xyWC1Zz90L6KvFrZQ-V5h8H2yuD1w/edit?usp=sharing
Sept 18AnushaQiu, Q., Hu, P., Qiu, X. et al. Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq. Nat Methods (2020). https://doi.org/10.1038/s41592-020-0935-4.   https://www.nature.com/articles/s41592-020-0935-4
Sept 25Nicolas
Fang, B., Kemppainen, P., Momigliano, P., Feng, X., & Merilä, J. (2020). On the causes of geographically heterogeneous parallel evolution in sticklebacks. Nature Ecology & Evolution, 4(8), 1105-1115.  https://www.nature.com/articles/s41559-020-1222-6

Oct 2HannahStern, D.B., Lee, C.E. Evolutionary origins of genomic adaptations in an invasive copepod. Nat Ecol Evol 4, 1084–1094 (2020). https://doi.org/10.1038/s41559-020-1201-y
Oct 9Carl St. John
Taylor, RSManseau, MHorn, RLKeobouasone, SGolding, GBWilson, PJThe role of introgression and ecotypic parallelism in delineating intraspecific conservation unitsMol Ecol2020292793– 2809https://doi-org.proxy.library.cornell.edu/10.1111/mec.15522
Oct 16Raunak Sen
Meier, J. I., Marques, D. A., Mwaiko, S., Wagner, C. E., Excoffier, L., & Seehausen, O. (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications8(1), 1-11. https://www.nature.com/articles/ncomms14363/
Oct 23No Class. Lab of O Director interview 
Oct 30Henry Kunerth Wendy A Valencia-Montoya, Samia Elfekih, Henry L North, Joana I Meier, Ian A Warren, Wee Tek Tay, Karl H J Gordon, Alexandre Specht, Silvana V Paula-Moraes, Rahul Rane, Tom K Walsh, Chris D Jiggins, Adaptive Introgression across Semipermeable Species Boundaries between Local Helicoverpa zea and Invasive Helicoverpa armigera Moths, Molecular Biology and Evolution, Volume 37, Issue 9, September 2020, Pages 2568–2583, https://doi.org/10.1093/molbev/msaa108
Nov 6Adriana Hernandez
Nov 13Bryce Robinson
Nov 20Amelia-Juliette Demery

Nov 27No Class. THANKGSGIVING

 Dec 4 Liam Zarri 
 Dec 11  


Recent Documents

  • valencia_montoya_2020.pdf   917k - Oct 28, 2020, 7:01 AM by Kelly Zamudio (v1)
  • Meier_etal2017_cichlid.pdf   851k - Oct 28, 2020, 7:02 AM by Kelly Zamudio (v2)
  • Tayloretal_MolEcol.pdf   1291k - Oct 28, 2020, 7:02 AM by Kelly Zamudio (v2)
  • Stern&Lee2020.pdf   8264k - Oct 28, 2020, 7:02 AM by Kelly Zamudio (v2)
  • Fangetal_sticklebacks.pdf   7114k - Oct 28, 2020, 7:02 AM by Kelly Zamudio (v2)
Showing 5 files from page Papers for reading.


Meeting readings & announcements

  • October 30, 2020 Introgression between local and invasive moths Hi non-modelers,This week Henry will be leading our discussion in non-models journal club with this paper:Wendy A Valencia-Montoya, Samia Elfekih, Henry L North, Joana I ...
    Posted Oct 28, 2020, 7:07 AM by Kelly Zamudio
  • Sept 25, 2020 Parallel evolution in sticklebacks Hi non-modelers,This week Nicolas will be leading our discussion in non-models journal club with this paper:Fang, B., Kemppainen, P., Momigliano, P., Feng, X., & Merilä, J. (2020 ...
    Posted Sep 21, 2020, 2:31 PM by Kelly Zamudio
  • Sept 18, 2020 explore time-resolved RNA Seq! Hi non-modelers,This week Anusha will be leading our discussion in non-models journal club with this paper:Qiu, Q., Hu, P., Qiu, X. et al. Massively parallel and ...
    Posted Sep 14, 2020, 3:41 PM by Kelly Zamudio
  • April 26: Clutching My Pearls: Genetic Architecture of Pearl Quality Hi non-modelers,Next week Allison and Jeremy will be leading our discussion in non-models journal club with this paper:Le Luyer, et al., 2019. Whole transcriptome sequencing and ...
    Posted Apr 21, 2019, 6:06 PM by Kelly Zamudio
  • April 19, Slow and steady! Landscape Genomics of Desert Tortoises Hi non-modelers,Next week Cinnamon will be leading our discussion in non-models journal club with this paper:Sánchez-Ramírez et al., 2018. Landscape limits gene flow and drives ...
    Posted Apr 14, 2019, 1:39 PM by Kelly Zamudio
Showing posts 1 - 5 of 64. View more »

Upcoming talks