Non-Model Genomics Journal Club - Fall 2020

This journal club is a venue for learning about recent research using genomic tools to address ecological and evolutionary questions in non-model organisms (i.e. species that have not been selected by large research communities for extensive study), exploring new techniques and applications to your own data, and sharing experiences and knowledge about application of genomics to non-model systems.

Make sure you are receiving email announcements! To join, send an email to NONMOD-GEN-JC-L-request@cornell.edu with subject "join" and leave message body blank.

Instructor:  Kelly R. Zamudio (krz2@cornell.edu) and Cinnamon Mittan (csm259@cornell.edu)

When: Fridays 11:00-12:00 pm   Where ZOOM! (our seminar will be remote this semester)

Fall 2020 Meeting Calendar

 Date Discussion LeaderPaper
 Sep 4 2020Organizational Meeting
Sept 11EveryoneSingle slide Lightening Topic Intros. 1 slide and 3 minutes each! Upload your slide at https://docs.google.com/presentation/d/1YgaKxijfWOZ9c9xyWC1Zz90L6KvFrZQ-V5h8H2yuD1w/edit?usp=sharing
Sept 18AnushaQiu, Q., Hu, P., Qiu, X. et al. Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq. Nat Methods (2020). https://doi.org/10.1038/s41592-020-0935-4.   https://www.nature.com/articles/s41592-020-0935-4
Sept 25Nicolas
Fang, B., Kemppainen, P., Momigliano, P., Feng, X., & Merilä, J. (2020). On the causes of geographically heterogeneous parallel evolution in sticklebacks. Nature Ecology & Evolution, 4(8), 1105-1115.  https://www.nature.com/articles/s41559-020-1222-6

Oct 2HannahStern, D.B., Lee, C.E. Evolutionary origins of genomic adaptations in an invasive copepod. Nat Ecol Evol 4, 1084–1094 (2020). https://doi.org/10.1038/s41559-020-1201-y
Oct 9Carl St. John
Taylor, RSManseau, MHorn, RLKeobouasone, SGolding, GBWilson, PJThe role of introgression and ecotypic parallelism in delineating intraspecific conservation unitsMol Ecol2020292793– 2809https://doi-org.proxy.library.cornell.edu/10.1111/mec.15522
Oct 16Raunak Sen
Meier, J. I., Marques, D. A., Mwaiko, S., Wagner, C. E., Excoffier, L., & Seehausen, O. (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications8(1), 1-11. https://www.nature.com/articles/ncomms14363/
Oct 23No Class. Lab of O Director interview 
Oct 30Henry Kunerth Wendy A Valencia-Montoya, Samia Elfekih, Henry L North, Joana I Meier, Ian A Warren, Wee Tek Tay, Karl H J Gordon, Alexandre Specht, Silvana V Paula-Moraes, Rahul Rane, Tom K Walsh, Chris D Jiggins, Adaptive Introgression across Semipermeable Species Boundaries between Local Helicoverpa zea and Invasive Helicoverpa armigera Moths, Molecular Biology and Evolution, Volume 37, Issue 9, September 2020, Pages 2568–2583, https://doi.org/10.1093/molbev/msaa108
Nov 6Adriana HernandezTwyford, Alex D., Edgar LY Wong, and Jannice Friedman. "Multi-level patterns of genetic structure and isolation by distance in the widespread plant Mimulus guttatus." Heredity 125.4 (2020): 227-239.
Nov 13Bryce RobinsonWang, S., Rohwer, S., de Zwaan, D. R., Toews, D. P., Lovette, I. J., Mackenzie, J., & Irwin, D. Selection on a small genomic region underpins differentiation in multiple color traits between two warbler species. Evolution Letters.
Nov 20Amelia-Juliette DemeryWillink, Beatriz, Mary Catherine Duryea, Christopher Wheat, and Erik I. Svensson. "Changes in gene expression during female reproductive development in a color polymorphic insect." Evolution (2020). https://onlinelibrary-wiley-com.proxy.library.cornell.edu/doi/pdfdirect/10.1111/evo.13979 
Nov 27No Class. THANKGSGIVING

 Dec 4 Liam ZarriGervais, L., Perrier, C., Bernard, M., Merlet, J., Pemberton, J. M., Pujol, B., & Quéméré, E. (2019). RAD‐sequencing for estimating genomic relatedness matrix‐based heritability in the wild: A case study in roe deer. Molecular ecology resources19(5), 1205-1217.  https://doi.org/10.1111/1755-0998.13031
 Dec 11 Andrew Legan Policarpo, Maxime, Julien Fumey, Philippe Lafargeas, Delphine Naquin, Claude Thermes, Magali Naville, Corentin Dechaud et al. "Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals." Molecular Biology and Evolution (2020): msaa249. https://doi:10.1093/molbev/msaa249


Recent Documents

  • msaa249.pdf   1195k - Dec 7, 2020, 11:36 AM by Cinnamon Mittan (v1)
    ‎Reading for December 11, 2020. Leader: Andrew Legan‎
  • Gervais2018.pdf   1338k - Dec 1, 2020, 8:57 AM by Kelly Zamudio (v1)
    ‎Reading December 4, 2020‎
  • evo.13979.pdf   1472k - Dec 1, 2020, 8:57 AM by Kelly Zamudio (v2)
    ‎Reading for November 20, 2020‎
  • Wang-etal2020.pdf   2624k - Dec 1, 2020, 8:57 AM by Kelly Zamudio (v2)
    ‎Reading for 11/13/2020‎
  • s41437-020-0335-7.pdf   2723k - Dec 1, 2020, 8:57 AM by Kelly Zamudio (v2)
    ‎Reading for November 6th, 2020‎
Showing 5 files from page Papers for reading.


Meeting readings & announcements

  • October 30, 2020 Introgression between local and invasive moths Hi non-modelers,This week Henry will be leading our discussion in non-models journal club with this paper:Wendy A Valencia-Montoya, Samia Elfekih, Henry L North, Joana I ...
    Posted Oct 28, 2020, 7:07 AM by Kelly Zamudio
  • Sept 25, 2020 Parallel evolution in sticklebacks Hi non-modelers,This week Nicolas will be leading our discussion in non-models journal club with this paper:Fang, B., Kemppainen, P., Momigliano, P., Feng, X., & Merilä, J. (2020 ...
    Posted Sep 21, 2020, 2:31 PM by Kelly Zamudio
  • Sept 18, 2020 explore time-resolved RNA Seq! Hi non-modelers,This week Anusha will be leading our discussion in non-models journal club with this paper:Qiu, Q., Hu, P., Qiu, X. et al. Massively parallel and ...
    Posted Sep 14, 2020, 3:41 PM by Kelly Zamudio
  • April 26: Clutching My Pearls: Genetic Architecture of Pearl Quality Hi non-modelers,Next week Allison and Jeremy will be leading our discussion in non-models journal club with this paper:Le Luyer, et al., 2019. Whole transcriptome sequencing and ...
    Posted Apr 21, 2019, 6:06 PM by Kelly Zamudio
  • April 19, Slow and steady! Landscape Genomics of Desert Tortoises Hi non-modelers,Next week Cinnamon will be leading our discussion in non-models journal club with this paper:Sánchez-Ramírez et al., 2018. Landscape limits gene flow and drives ...
    Posted Apr 14, 2019, 1:39 PM by Kelly Zamudio
Showing posts 1 - 5 of 64. View more »

Upcoming talks