Papers

    2017

  1. Glade N., Bastien O., Ballet P., Diversity and survival of artificial lifeforms under sedimentation and random motion, Theor. Biosci. (2017) doi: 10.1007/s12064-017-0254-1

  2. 2013
  3. Ben Amor H., Corblin F., Fanchon E., Elena A., Trilling L., Demongeot J., Glade N., Formal Methods for Hopfield-like networks, Acta Biotheor. (2013) 61, 21-39

  4. 2012
  5. Glade N., On the nature and shape of tubulin trails : Implications on microtubule self-organization, Acta Biotheor. (2012) 60, 55-82
  6. Chekhchoukh A., Glade N., Influence of sparkle and saccades on tongue electro-stimulation-based vision substitution of 2D vectors, Acta Biotheor. (2012) 60, 41-53
  7. Glade N., Ballet P., Bastien O., A stochastic process approach of the drake equation parameters, Int. J. Astrobiology (2012) 11, 103-108

  8. 2011
  9. Norris V., Zemirline A., Amar P., Audinot J. N., Ballet P., Ben Jacob E., Bernot G., Beslon G., Cabin A., Fanchon E., Giavitto J. -L., Glade N., Greussay P., Grondin Y., Foster J. A., Hutzler G., Kepes F., Michel O., Molina F., Signorini J., Stano P., Thierry A. R., Computing with bacterial constituents, cells and populations: from bioputing to bactoputing, Theory in Biosciences (2011) 130, 211-228

  10. 2010
  11. Ben Amor H., Glade N., Lobos C., Demongeot J., The isochronal fibration: characterization and implication in biology, Acta Biotheoretica (2010) 58, 121-142

  12. 2009
  13. Demongeot J., Glade N., Moreira A., Vial L., RNA Relics and the Origin of Life. Int. J. Mol. Sci. (2009) 10, 3420-3441
  14. Abbas L., Demongeot J., Glade N., Synchrony in Reaction-diffusion models of morphogenesis: applications to curvature-dependent proliferation and zero-diffusion front waves, Phil. Trans. Roy. Soc. A (2009) 367, 4829-4862 Royal Society Publishing

  15. 2008
  16. Glade N., Computing with the cytoskeleton: A problem of Scale. Int. J. Unconventional Computing (2008) 4:1, 33-44
  17. Demongeot J., Glade N., Moreira A., Evolution and RNA relics. A system biology view, Acta Biotheor. (2008) 56:1-2, 5-25

  18. 2007
  19. Demongeot J., Glade N., Forest L., Lienard systems and potential-hamiltonian decomposition. I Algorithm, C. R. Mathématique (2007) 344, 121-126
  20. Demongeot J., Glade N., Forest L., Lienard systems and potential-hamiltonian decomposition. II Methodology, C. R. Mathématique (2007) 344, 191-194
  21. Glade N., Forest L., Demongeot J., Lienard systems and potential-hamiltonian decomposition. III Applications, C. R. Mathématique (2007) 344, 253-258
  22. Forest L., Glade N., Demongeot J., Lienard systems and potential-hamiltonian decomposition. Applications in biology, C. R. Biologies (2007) 330, 97-106
  23. Sordel T., Kermarec-Marcel F., Garnier-Raveaud S., Glade N., Sauter-Starace F., Pudda C., Borella M., Chatelain F., Bruckert F., Picollet-D'hahan N., Influence of glass and polymer coatings on CHO cell morphology and adhesion, Biomaterials (2007) 27, 1572-1584
  24. Tabony J., Rigotti N., Glade N., Cortes S., Effect of weightlessness on colloidal particle transport and segregation in self-organising microtubule preparations, Biophys. Chem. (2007) 127, 172-180
  25. Demongeot J., Glade N., Hansen O., Moreira A., An open problem: the inner mitochondrial membrane (IMM) as a free boundary problem, Biochimie (2007) 89, 1049-1057

  26. 2006
  27. Glade N., Beaugnon E., Tabony J., Ground-based methods reproduce space-flight experiments and show that weak vibrations trigger microtubule self-organisation, Biophys. Chem. (2006) 121, 1-6

  28. 2005
  29. Vulto P., Glade N., Altomare L., Bablet J., Medoro G., Chartier I., Manaresi N., Tartagni M., Guerrieri R., Microfluidic channel fabrication in dry film resist for production and prototyping of hybrid chips, Lab on a Chip (2005) 5, 158-162
  30. Glade N., Tabony J., Brief exposure to magnetic fields determine microtubule self-organisation by reaction-diffusion processes, Biophys. Chem. (2005) 115, 29-35
  31. Cortes S., Glade N., Chartier I., Tabony J., Microtubule self-organisation by reaction-diffusion processes in miniature cell-sized containers and phospholipid vesicles, Biophys. Chem. (2005) 120, 168-177

  32. 2004
  33. Tabony J., Glade N., Papaseit C., Demongeot J., Microtubule self-organisation as an example of the development of order in living systems, J. Biol. Phys. Chem. (2004) 4, 50-63
  34. Glade N., Demongeot J., Tabony J., Microtubule self-organisation by reaction-diffusion processes causes collective transport and organisation of cellular particles, BMC Cell Biol. (2004) 5:23

  35. 2003
  36. Demongeot J., Bézy-Wendling J., Mattes J., Haigron P., Glade N., Coatrieux J.-L., Multiscale modeling and imaging: The challenges of biocomplexity, Proc. IEEE (2003) 91, 1723-1737

  37. 2002
  38. Glade N., Tabony J., The effect on microtubule self-organisation of reduced gravity levels produced in ground based experiments; comparison with space flight experiments, J. Phys. IV, France (2001) 6, 255-260
  39. Tabony J., Glade N., Papaseit C., Demongeot J., The effect of gravity on microtubule self-organisation, J. Phys. IV, France (2001) 11, 239-246
  40. Glade N., Demongeot J., Tabony J., Comparison of reaction-diffusion simulations with experiment in self-organised microtubule solutions, C. R. Biologies (2002) 325, 283-294
  41. Tabony J., Glade N., Demongeot J., Papaseit C., Biological self-organization by way of microtubule reaction-diffusion processes, Langmuir (2002) 18:19, 7196-7207
  42. Glade N., Demongeot J., Tabony J., Numerical simulations of microtubule self-organisation by reaction-diffusion, Acta Biotheoretica (2002), 50:4, 239-268
  43. Tabony J., Glade N., Demongeot J., Microtubule self-organization: a biological exemple of 'emergent' phenomena in a 'complex' system, Recent. Res. Devel. Biophys. Chem. (2002) 3, 11-53
  44. Tabony J., Glade N., Papaseit C., Demongeot J., Gravity dependence of microtubule preparations, J. Gravitational Physiology (2002) 9, pp 10-14

Conference Proceedings & Workshops


    2018
     
  1. Vuong Q.-T., Chauvin R., Ivanov S., Glade N., Trilling L., A logical constraint-based approach to infer and explore diversity and composition in thresholded Boolean automaton networks, Studies in Computational Intelligence Series, Proceedings of the Complex Networks 2017 conference (2017) DOI: 10.1007/978-3-319-72150-7_46

  2. 2013
  3. Chekhchoukh A., Vuillerme N., Payan Y., Glade N., Effect of saccades in tongue electrotactile stimulation for vision substitution applications, Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'13 (2013) 3543-3546
  4. Chekhchoukh A., Goumidi M., Vuillerme N., Payan Y., Glade N., Electrotactile vision substitution for 3D trajectory following, Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC’13 (2013) 6413-6416

  5. 2011
  6. Glade N., Elena A., Corblin F., Fanchon E., Demongeot J., Ben-Amor H., Determination, optimization and taxonomy of regulatory networks - The example of Arabidopsis thaliana flower morphogenesis, IEEE AINA' 11 & BLSMC' 11, Singapore, IEEE Proceedings, Piscataway (2011)
  7. Chekhchoukh A., Vuillerme N., Glade N., Vision substitution and moving objects tracking in 2 and 3 dimensions via vectorial electro-stimulation of the tongue, Proceedings of the ASSISTH'2011 : 2ème Conférence Internationale sur l'accessibilité et les systèmes de suppléance aux personnes en situations de handicaps, "De l'usage des STIC ´ une plus grande autonomie : des recherches interdisciplinaires", Vigouroux N., Gorce P., Abraham M. and Piette F. (eds), Paris, France, 283-297 (2011)

  8. 2010
  9. Ben-Amor H., Glade N., Demongeot J., Mnesic Evocation: An isochron-based analysis, IEEE AINA' 10 & BLSMC' 10, Perth, Australia, IEEE Proceedings, Piscataway, 745-750 (2010)

  10. 2009
  11. Norris V., Amar P., Aimar M., Ballet P., Batto A.-F., Barlovatz G., Bernot G., Beslon G., Cabin A., Chevalier S., Delaune A., Delosme J.-M., Fanchon E., Gao H., Glade N., Grondin Y., Hernandez-Verdun D., Janniere L., Képès F., Lange C., Legent G., Loutelier-Bourhis C., Molina F., Orange N., Raine D., Ripoll C., Thellier M., Thierry A., Tracqui P., Zemirline A.: Hyperstructures 2008-2009, In 'Modelling Complex Biological Systems in the Context of Genomics', Proceedings of the La Colle sur Loup Spring School (2009) P. Amar, F. Kepes, V. Norris (Eds) pp 71-84
  12. Glade N.,Ben Amor H., Bastien O., Trail Systems as fault tolerant wires and their use in bio-processors, In 'Modelling Complex Biological Systems in the Context of Genomics', Proceedings of the La Colle sur Loup Spring School (2009) P. Amar, F. Kepes, V. Norris (Eds) pp 85-119

  13. 2008
  14. Elena A., Ben-Amor H., Glade N., Demongeot J.: Motifs in Regulatory Networks and their Structural Robustness. IEEE Transactions on Information Technology in Biomedicine, 8th IEEE International Conference on BioInformatics and BioEngineering, 2008. BIBE 2008., Athens : Grèce (2008)
  15. V Norris, A Zemirline, P Amar, P Ballet, E Ben Jacob, G Bernot, G Beslon, E Fanchon, J-L Giavitto, N Glade, P Greussay, Y Grondin, J A Foster, G Hutzler, F Kepes, O Michel, G Misevic, F Molina, J Signorini, P Stano, A Thierry, Bactoputing: computing with bacteria, In 'Modelling Complex Biological Systems in the Context of Genomics', Proceedings of the Lille Spring School (2008), P. Amar, F. Kepes, V. Norris, B. Vandenbunder (Eds)

  16. 2006
  17. Glade N., Existence and persistence of microtubule chemical trails - A step toward microtubule collision-based computing. In A. Adamatzky & C. Teuscher (eds): From Utopian to Genuine Unconventional Computers (Splendeurs et misères du calcul peu usuel), UC'06 Workshop proceedings. Luniver Press, UK (2006), 37-65.

  18. 2004
  19. Vulto P., Glade N., Altomare L., Bablet J., Medoro G., Leonardi A., Romani A., Chartier I., Manaresi N., Tartagni N., Guerrieri R., Dry film resist for fast fluidic prototyping, Micro Total Analysis Systems, Proceedings of the μTAS 8th conference, Special Publication – Royal Society of Chemistry (2004), 297, 43-45
  20. Tabony J., Glade N., Papaseit C., Demongeot J., Microtubule self-organisation as an example of the development of order in living systems, In 'Modelling Complex Biological Systems in the Context of Genomics', Proceedings of the Evry Spring School (2004), P. amar, J.-P. Cornet, F. Kepes, V. norris (Eds), pp 93-112

Books and chapters


    2015
  1. EDITORIAL : N. Glade & A. Stéphanou,  Le critique et le chaotique, essences de l'adaptabilité et de la robustesse du vivant, Editorial du recueil scientifique Le Vivant Critique et Chaotique, N. Glade & A. Stephanou (Eds), Collection "Modélisations, simulations, systèmes complexes", Editions Matériologiques (2015)
  2. CHAPTER : N. Glade, O. Bastien, H. Hessami, Phénomènes critiques en épidémiologie: résistance, spatialité, dynamiques humaines. Des modèles aux applications, dans Le Vivant Critique et Chaotique, N. Glade & A. Stephanou (Eds), Collection "Modélisations, simulations, systèmes complexes", Editions Matériologiques (2015)
  3. BOOK (as Scientific Editor) : F. Varenne, H. Berry , J. Demongeot , A. Chauvière, A. Stéphanou, N. Glade, M. Montévil, J.-P. Françoise, M. Lahutte-Auboin, F. Peruani, B. Caré, A. Lo Van, H. Soula, O. Bastien, H. Hessami, S. Jacquir, B. Xu, S. Binczak, J.-M. Bilbaut, V. Thomas-Vaslin, Le Vivant Critique et Chaotique, N. Glade & A. Stephanou (Eds), Collection "Modélisations, simulations, systèmes complexes", Editions Matériologiques (2015)


  4. 2013
  5. EDITORIAL : N. Glade & A. Stéphanou, Le vivant discret et continu : dualité et complémentarité des modes de représentation en biologie théorique, Editorial du recueil scientifique Le Vivant Discret et Continu, A. Stephanou & N. Glade (Eds), Collection "Sciences et Philosophie", Editions Matériologiques (2013)
  6. BOOK (as Scientific Editor) : H. Berry , S. R. Thomas, J. Demongeot , S. Bernard, V. Volpert, N. Bessonov, N. Eymard, A. Tosenberger , A. Chauvière, H. Hatzikirou, M. Tektonidis, A. Deutsch, E. Promayon, J. Berro, S. Portet, P. Amar, P. Baconnier, E. Fanchon, S. Lespinats, P. Ballet, A. Jeannin-Girardon, A. Pothet, G. Misevic, A. Fronville, V. Rodin, A. Stéphanou, N. Glade, Le Vivant Discret et Continu, A. Stephanou & N. Glade (Eds), Collection "Sciences et Philosophie", Editions Matériologiques (2013)


  7. 2003
  8. CHAPTER : Tabony J. & Glade N., Auto-organisation biologique et structures hors-équilibre: l'exemple des microtubules, Chapter in : 'Eléments de biologie à; l'usage d'autres disciplines. De la structure aux fonctions', P. Tracqui & J Demongeot (Eds), EDP Sciences (2003), pp 144-147. ISBN: 2868835872


  9. 2002
  10. CHAPTER (peer reviewed) : Tabony J., Glade N., Papaseit C., Demongeot J., Microtubule self-organisation and its gravity dependence, Chapter in: 'Advances in Space Biology and Medicine: Cell biology and biotechnology in space' (2002), Elsevier Science, A. Cogoli (Ed.) 8, pp 19-58. ISBN: 0444507353


Patents

    2004
  1. Plissonnier M., Chartier I., Borella M., Glade N., Procédé de localisation d'une espèce chimique ou biologique sur un substrat, microsystème d'analyse et biopuce / Localization process of chemical or biological substances on a substrate, on an analysis microsystem or a biochip. Brevet/Patent N°0407531

Others

    2002
  1. Tabony J. & Glade N., L'union fait la forme, La recherche (Nov. 2002) N°9 "Ordre et désordre"
  2. Glade N., Effet des champs externes faibles sur l'auto-organisation des microtubules. Comparaison entre expériences et simulations numériques. Ph.D. Thesis, J. Tabony & J. Demongeot (tutors)