In silico miRNA prediction

Plant miRNA targets

  • psRNA target: A web-based integrated computing system developed for plant miRNA target gene prediction in any plant, if a large number of sequences are available. Given a mature miRNA sequence from a plant species, the system thoroughly searches for potential complementary target sites with mismatches tolerable in miRNA-target recognition.
  • TAPIR: the server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA – target duplexes.
  • SoMART: server for the detection of targets for plant miRNAs and tasiRNAs.
  • TargetAling: tool for identification of miRNA targets in plants.
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