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Workshop:
 'Modeling complex dynamics in biological systems'

June 7 - 9, 2010

Université Paul Sabatier - Toulouse

 
 
 
 
 
 Workshop pictures :



 

Purpose of the workshop

 
This workshop is organized under the auspices of the MIBS project (Modeling and Information Processing for Systems Biology). MIBS is an interdisciplinary project involving all academic and research institutions of the Toulouse area, with the goal of promoting and developing a strong and wide expertise on systems biology in Toulouse.
 
Systems biology aims at understanding how biological systems operate at various scales, by studying the interactions between the individual constituents (genes, proteins, cells, organisms). At each of these organisational levels, the degree of complexity is such that information cannot be processed and integrated on a purely intuitive basis. For this reason, mathematical models play an increasingly important role. Such models must be elaborated on the bases of biological data and validated at both the elementary constituent and the global structure scales. Nowadays, the development of statistical analysis and mathematical modeling tools leads to the possibility of 'in silico' simulations of the various processes which underlie the operation of the biological systems at the various scales.
 
The use of these methods and the new investigation areas that they open are constantly growing.The goal of this workshop is to gather experts of this new interdisciplinary research field in an attempt to draw a sketch of the state-of-the-art and to spread the methodologies to a wide community of researchers.  
 
The workshop will consist of plenary talks of 45 minutes each plus 15 minutes for questions. The schedule will leave time slots for discussions and interactions among the participants.
 
The workshop will be followed by a one-day companion workshop:
'Mathematics of Complex Systems'
Thursday June 10, 2010
Amphi Concorde, Building U4, Paul Sabatier University
 
 

Meeting dates and location

 
The meeting will take place at the
 
Amphithéatre Concorde - Bât.U4
Université Paul Sabatier
118 route de Narbonne
31062 Toulouse cedex
 
 

Coming from the train station Toulouse Matabiau

By cab : about 20 minutes.

By subway : about 30 minutes. Take the subway line A direction Basso-Cambo. At  station Jean-Jaurès, change for subway line B direction Ramonville. Exit at station Université-Paul-Sabatier. Find the theatre using the campus map above. 

Train station Toulouse Matabiau (SNCF) 
Subway operator Tisséo (métro+bus)

     Coming from Toulouse Blagnac airport

By cab : about 30 minutes.

By shuttle + métro : about 50 minutes. Take the shuttle « navette aéroport Tisséo » (special bus) ane exit at the station Compans Caffarelli. Then, take the subway line B direction Ramonville. Exit at station Université-Paul-Sabatier. Find the theatre using the campus map above. 

 
The meeting dates are:
Monday June 7th 2010,  afternoon
Tuesday June 8th 2010
Wednesday June 9th 2010
 
 

Scientific and organizing committee

 
Institut de Mathématiques de Toulouse
 
Centre de Biologie du Développement, Toulouse
 
Laboratoire de Physique Théorique de Toulouse
 
Institut de Mécanique des Fluides de Toulouse
 
Centre de Recherches sur la Cognition Animale, Toulouse
 
 
 

Conference administration

 
Institut de Mathématiques de Toulouse,
Université Paul Sabatier,
118 route de Narbonne, 31062 Toulouse cedex,France
Phone: + 33 (0)5.61.55.74.85
Fax: + 33 (0)5.61.55.60.89
 
 

Conference web site

 
Institut de Mathématiques de Toulouse
 
Centre de Recherches sur la Cognition Animale, Toulouse
 
 

Sponsors

 
 
 
 

Preliminary list of speakers

 
 
Alethea Barbaro
Mathematics Department
University of California at Los Angeles
http://www.math.ucla.edu/~alethea/Site/Welcome.html
 
Interacting particle models for animal social dynamics
(with Baldvin Einarsson (Háskóli Íslands), Björn Birnir (UCSB), Sven Sigurðsson (Háskóli Íslands), and collaborators at the Marine Research Institute of Iceland ( H. Valdimarsson, Ó. K. Pálsson, S. Sveinbjörnsson, and Þ. Sigurðsson)
 
 
Charles Bordenave
Institut de Mathématiques de Toulouse
CNRS et Université Paul Sabatier, Toulouse
http://www.math.univ-toulouse.fr/~bordenave/
 
Optimization and dynamics on random graph Download the talk
(with Marc Lelarge and Justin Salez (ENS-INRIA)).
 
 
Etienne Danchin
Evolution & Diversité Biologique (EDB)
CNRS & Université Paul Sabatier, Toulouse
http://www.edb.ups-tlse.fr
 
Modeling Biodiversity, the role of non-genetic inheritance in evolution Download the talk
(with Christophe Thébaud)
 
 
Andreas Deutsch
Centre for Information Services and High Performance Computing (ZIH)
Technical University Dresden
Web. http://theobio.mtbio.de/imc/
 
Analyzing emergent behaviour in cellular automaton models of cancer invasion Download the talk
 
 
Bernard Ducommun
Centre Pierre Potier, ITAV - UMS3039 CRT-RIV and
Laboratoire de Biologie Cellulaire et Moléculaire du Contrôle de la Proliferation,
CNRS & Université Paul Sabatier, Toulouse
http://web.me.com/bernard.ducommun/IP3D/
 
Study of cell behavior in 3D Multi Cellular Tumor Spheroids. Download the talk
(with Lobjois Valérie, Lorenzo Corinne, Valette Annie, Laurent Jennifer, Pocard Thomas and Frongia Céline)
 
 
Sylvie Hénon
Matière et Systèmes Complexes - UMR 7057, Université Paris 7
 
Microrheology of isolated cells and stiffening in response to external stress Download the talk
(with Atef Asnacios, Delphine Arcizet, Martial Balland and François Gallet)
 
 
Herve Isambert
UMR168 Institut Curie - Centre de Recherche,
http://www.curie.fr/equipe/314/lang/_gb
 
Non-adaptative constraints in biological network evolution. Download the talk
(with Kirill Evlampiev, Marco Cosentino-Lagomarsino, Richard Stein & Param Priya Singh)
 
 
Christian Jost
Centre de Recherches sur la Cognition Animale,
Université Paul Sabatier & CNRS
Equipe Dynamiques Complexes et Réseaux d?Interactions dans les Sociétés Animales
Web. http://cognition.ups-tlse.fr/dynactom/dynactom.html
Parameter estimation for individual based or mean field models from behavioural data Download the talk
 
 
Dominique Langin
Institut de Médecine Moléculaire de Rangueil (I2MR),
Inserm U858 - Université Paul Sabatier, Toulouse
http://i2mr.toulouse.inserm.fr/en/page.asp?page=1425  
 
Transcriptomics in human nutrition and obesity
(with Nathalie Viguerie and Balbine Roussel)
 
 
François Nedelec
European Molecular Biology Laboratory Heidelberg
Cell Biology and Biophysics Unit
www.cytosim.org
 
Microtubule organization in Xenopus meiotic spindles
(with Rose Loughlin & Rebecca Heald)
 
 
Andrew C. Oates
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
 
Patterning embryos with synchronized oscillations
 
 
John Palmeri
Laboratoire de Physique Théorique de Toulouse,
CNRS et Université Paul Sabatier, Toulouse
http://www.lpt.ups-tlse.fr/
 
Bubbles and Bending:  how DNA's conformational fluctuations influence its thermal denaturation
(with N. Destainville and M. Manghi)
 
 
Sylvie Tournier
Laboratoire de Biologie Cellulaire et Moléculaire du Contrôle de la Proliferation,
CNRS & Université Paul Sabatier, TOULOUSE
http://www-lbcmcp.ups-tlse.fr
 
Modelling chromosome attachment and segregation in fission yeast
 
 

Schedule

 

 

 Monday June 7

 Tuesday June 8

 Wednesday June 9

 9:00 - 10:00

 

Talk 4

John Palmeri

Talk 9

Etienne Danchin

 10:00 - 11:00

 

Talk 5

Dominique Langin

 Talk 10

Christian Jost

 11:00-11:30

 

Coffee break 

Coffee break 

 11:30-12:30

 

Talk 6

Sylvie Hénon

Talk 11

Alethea Barbaro

 12:30-14:00

 

Lunch 

Lunch 

 14:00 - 15:00

 Welcome & Talk 1

François Nedelec

 Talk 7

Bernard Ducommun

Talk 12

Charles Bordenave

 15:00 - 16:00

 Talk 2

Sylvie Tournier

 Talk 8

Andreas Deutsch

Talk 13

Andrew C. Oates

 16:00 - 16:30

Coffee break 

Coffee break 

Coffee break 

 16:30 - 17:30

 Talk 3

Hervé Isambert

 Round table

 Conclusion of the workshop

 
 

Accomodation

 
 
 

Registration



 

Companion workshop: 'Mathematics of complex systems'

 
 
Thursday June 10, 2010
 
List of lectures:
 
40 mn lectures + 5 mn questions:
 

9:00 - 9:45
Alethea Barbaro
Mathematics Department
University of California at Los Angeles
http://www.math.ucla.edu/~alethea/Site/Welcome.html
 
Agent-based models for gang dynamics
 
9:45 - 10:30
Adrien Blanchet,
Toulouse School of Economics
Université Toulouse Capitole
http://idei.fr/member.php?i=1854&site=TSE&data=TSE&lang=fr
 
Asymptotics for the critical mass Patlak-Keller-Segel model
 
 
10:30 - 11:00: coffee break
 
11:00-11:45
Eric Carlen
Department of Mathematics
Rutgers University
http://www.math.rutgers.edu/~carlen/
 
Propagation of chaos in some kinetic models of mathematical biology
 
 
11:45-12:30
Maria da Conceicao Vieira de Carvalho
Centro de Matemática e Aplicações Fundamentais
Universidade de Lisboa
http://www.ciul.ul.pt/~mcarvalh/
 
Wild sum methods for some kinetic models of mathematical biology
 
 
12:30-14:00: Lunch
 
14:00-14:45
Vladislav Panferov
Department of Mathematics
California State University, Northridge, USA
http://www.csun.edu/~panferov/
 
Kinetic and hydrodynamic models of flocking
 

14:45-15:30:
Irene M. Gamba
Department of Mathematics
University of Texas at Austin
 
Multi-linear interactions in the dynamics of information
 
15:30-16:00
Coffee break
 
16:00-17:00: Junior researcher session
25 mn lectures + 5 mn questions:
 
 
16:00-16:30
Amic Frouvelle
Institut de Mathématiques de Toulouse
CNRS & Université Paul Sabatier
http://www.math.univ-toulouse.fr/1-17731-Fiche-professionnelle.php?idFiche=538
 
Phase transition in a kinetic model of oriented particles
 
 
16:30-17:00
Jiale Hua

Institut de Mathématiques de Toulouse
CNRS & Université Paul Sabatier
http://www.math.univ-toulouse.fr/1-17731-Fiche-professionnelle.php?idFiche=609
 
Numerical simulations of the Euler system with congestion

 


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Bordenave.pdf
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Jun 10, 2010, 5:22 AM
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Companion_WorkshopMIBS_schedule.pdf
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Jun 2, 2010, 5:12 AM
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Danchin.pdf
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Deutsch.pdf
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Ducommun.pdf
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Henon.pdf
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Isambert.pdf
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Jost.pdf
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Registration.pdf
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WorkshopMIBS_schedule.pdf
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