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MCSim - a MetaCommunity Simulation for ecologists using R

Introduction

MCSim is a package for R that can be used to design lottery-based simulations of metacommunities, which can be used to test assumptions about how metacommunity dynamics influence emergent biodiversity patterns. See my paper in Ecological Modelling (link), which uses MCSim v0.3, and our paper in Oikos (link) that uses the most recent release (v0.4.2), users can make use of igraph to design network topology and seed simulations with observed data. Please find the current version under development at https://github.com/sokole/MCSim.   

Find an intro to MCSim here

Messages

  • See the new MCSim paper coming out in Oikos! http://onlinelibrary.wiley.com/doi/10.1111/oik.03690/full
    Posted Nov 10, 2016, 10:45 AM by Eric Sokol
  • Modeling McMurdo Diatom metacommunities See how we're applying MCSim to understand Diatom biodiversity at the McMurdo LTER:http://mcm.lternet.edu/content/metacommunity-dynamics-simulations-diatoms-antarctic-pondsThis is an ongoing project ...
    Posted Mar 14, 2016, 11:39 AM by Eric Sokol
  • Tutorials to get started with MCSim Check out the TUTORIALS tab, which will list the tutorials I have posted at  http://rpubs.com/sokole. Currently, an intro to MCSim is available (http://rpubs.com/sokole/159425 ...
    Posted Mar 8, 2016, 12:31 PM by Eric Sokol
  • MCSim version 0.4 I've updated MCSim so that users can seed simulations with observed data, and use igraph to create specific network topologies for their simulations. For example, below I've used ...
    Posted Mar 3, 2016, 1:00 PM by Eric Sokol
  • Applying simulations to understand metacommunities The overall goal of a metacommunity simulation package for R is to create a framework where ecologists can run "experiments" in silico to see how changing the properties of a ...
    Posted Oct 15, 2014, 8:20 AM by Eric Sokol
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