Publications P. Meyer, T. Cokelaer, D. Chandran, K. H. Kim, P.R. Loh, G. Tucker, M. Lipson, B. Berger, C. Kreutz, A. Raue, B. Steiert, J. Timmer, E. Bilal, H. M. Sauro, G. Stolovitzky, J. SaezRodriguez. Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Systems Biology 8:13 (2014)
 T Maarleveld, KNG Bennet, H Sauro, K Kim. In Silico Design of SelfOptimizing Integrated Metabolic and Gene Regulatory Networks. bioRxiv, 007658 (2014)
 K. H. Kim, H. Qian, and H. M. Sauro. Nonlinear Biochemical Signal Processing via Noise Propagation. Journal of Chemical Physics 139:144108 (2013)
 K. H. Kim and H. M. Sauro. In Search of NoiseInduced Bimodality. BMC Biology 10:89 (2012)
 K. H. Kim and H. M. Sauro. Measuring the degree of modularity in gene regulatory networks from the relaxation of finite perturbations. Proc. IEEE Conf. on Decision and Control (Invited Paper) (2012)
 W. B. Copeland, D. Chandran, B. A. Bartley, M. Galdzicki, K. H. Kim, C. Maranas, S. C. Sleight, and H. M. Sauro. Computational Tools for Metabolic Engineering. Metabolic Engineering 14:270280 (2012)
 K. H. Kim, and H. M. Sauro. Adjusting Phenotypes by Noise Control. PLoS Computational Biology 8:e1002344 (2012)
 K. H. Kim, and H. M. Sauro. Measuring Retroactivity from Noise in Gene Regulatory Networks. Biophysical Journal 100:11671177 (2011)
 K. H. Kim, D. Chandran, and H.M. Sauro. Toward Modularity in Synthetic Biology: Design Patterns and Fanout. In Heinz Koeppl, et al, Design and Analysis of Biomolecular Circuits. SpringerVerlag. pp117138 (book chapter, 2011)
 K. H. Kim, and H. M. Sauro. Fanout in Gene Regulatory Networks. Journal of Biological Engineering 4:16 (2010)
 K. H. Kim, and H. M. Sauro. Sensitivity Summation Theorems for Stochastic Biochemical Reaction Systems. Mathematical Biosciences 226:109 (2010)
 K. H. Kim, and H. M. Sauro. Stochastic Control Analysis for Biochemical Reaction Systems. arXiv:0904.3124 [qbio.QM] (2009)
 K. H. Kim and M. den Nijs. Dynamic Screening in a Twospecies Asymmetric Exclusion Process. Phys. Rev. E 76, 021107 (2007)
 K. H. Kim and H. Qian. Fluctuation Theorems of a Molecular Refrigerator. Phys. Rev. E 75, 022102 (2007)
 K. H. Kim. Heat Dissipation from Brownian Particles under Hydrodynamic Interactions. condmat/0609636 (2006)
 K. H. Kim and H. Qian. Entropy Production of Brownian Macromolecules with Inertia. Phys. Rev. Lett. 93, 120602 (2004)
Ph.D. Thesis

