Welcome to my professional website

Not updated after 2012


Md. Khayrul Bashar, Ph. D
Project Assistant Professor

Institute of Industrial Science
The University of Tokyo
4-6-1 Komaba, Meguro-ku,
Tokyo 153-8505, Japan
Phone: +81-03-5452-6797

Work Experiences
  • The University of Tokyo, Institute of Industrial Science, Cellular Community Project,  April 2010 to now.  
  • Nagoya University, Graduate School of Engineering, MEXT Innovative Research Center for Preventive Medical Engineering,  Japan, April, 2007 to March, 2010.
  • Nagoya University, Graduate School of Information Science, Center of Excellence Project (IMI-COE),  April, 2006 to March, 2007.
  • Nagoya University, Graduate School of Engineering, E-Society Project,  April 2004 to March, 2006.
  • Bangladesh Institute of Technology Chittagong (BITC), Departments of CSE and EEE,  June, 1999 to October, 2000.
  • Bangladesh Space Research and Remote Sensing Organization (SPARRSO), Dhaka, Bangladesh, July, 1995 to June, 1999.

Research Fields

My research area is interdisciplinary comprehensive science that includes disciplines like Social / informatics, Biomedical Engineering, and Bio-informatics. Major research fields include image understanding, machine learning, and computer vision. Current research interests include image/video analysis for Bio-medical applications. Specific focus is involved on image enhancement, noise reduction, feature extraction (texture, color, and shape), objects segmentation and classification, and object tracking from four dimensional microscopy images for Biological applications. Other recent works involve segmentation, registration, and stitching of medical images (Wireless Capsule Endoscopy Video Images, Computed Tomography (CT) images) for medical applications and welfare engineering. Some past works include image texture segmentation, content-based image indexing and retrieval, passive detection of visual media tampering; design, development and analysis of reliable web applications etc.

Selected Publications


Refereed Journal
  • M. K. Bashar, K. Komatsu, T. Fujimori, and T. J. Kobayashi, “Automatic Extraction of Nuclei Centroids of Mouse Embryonic Cells using Fluorescence Microscopy Images”, recently submitted.
  • M. K. Bashar, K. Noda, N. Ohnishi, “Exploring Duplicated Regions in Natural Images”, to appear in IEEE Trans. Image Processing (TIP) [DOI: 10.1109/ TIP. 2010. 2046599] [view online]
  • M. K. Bashar, Takayuki Kitasaka, Yukitaka Nimura, Kensaku Mori, "Abdominal vessel extraction using 3D region growing and label discontinuity measure," International Jounral of Computer Assistd Radiolgy and Surgery, Vol. 5, Suppl. 1, pp. S50-S57, June 2010.
  • M. K. Bashar, Y. Suenaga, T. Kitasaka, Y. Mekada, and K. Mori “Automatic Detection of Informative Frames from Wireless Capsule Video Endoscopic Images”, Medical Image Analysis, Elsevier Science, Vol.14, No.3, pp. 449-470, June 2010.
  • K. Noda, M. K. Bashar, Y. Takeuchi, and N. Ohnishi, “Detecting Partially Duplicated Image Regions in a Digital Image”,  Journal of  ITEJ (the Institute Image Information and Television Engineers), Vol. 63, No. 11, pp. 1645- 1651, 2009.
  • M. K. Bashar, K. Mori, Y. Suenaga, T. Kitasaka and Y. Mekada, “Mosaicing Capsule Endoscopic Images Using Phase Correlation”, International Jounral of Computer Assistd Radiolgy and Surgery, pp. S49-S51, June, 2009.
  • M. K. Bashar, N. Ohnishi and K. Agusa, “A New Texture Representation Scheme based on Feature Saliency”, Journal of Pattern Recognition and Image Analysis, Pleiades Publishing, Vol. 17, No.1, pp. 11-24, 2007.
  • M. K. Bashar, N. Ohnishi, and K. Agusa, “Wavelet Intermittency Index-Based Saliency Measures for Texture Segmentation”,  Journal of Pattern Recognition and Image Analysis, Pleiades Publishing, Vol. 15, No. 1, pp. 119-122, January-March 2005. 
  •  M. K. Bashar, N. Ohnishi, T. Matsumoto, Y. Takeuchi, and H. Kudo,"Image Retrieval by Pattern Categorization Using Wavelet Domain Perceptual Features with LVQ Neural Network”, Pattern Recognition Letters, Elsevier science, Vol. 26, No. 15, pp. 2315-2335, 2005. Appeared in the top 25 hottest articles in 2005.
  • M. K. Bashar, N. Ohnishi, “Wavelet-based salient energy points for unsupervised texture segmentation”, International Journal  of  Pattern Recognition and Artificial Intelligence, World Scientific Publishing, Vol. 19, No. 3, pp. 429-457, May 2005.
  • M. K. Bashar, T. Matsumoto, and N. Ohnishi, “Wavelet Transform based Locally Orderless Images for Texture Segmentation”, Pattern Recognition Letters, Elsevier science, Vol.24, No.15, pp.2633-2650, November, 2003. Appeared in the top 25 hottest articles in 2003.
  • M. K. Bashar, N. Ohnishi, “Integrating Cortex Transform and   Brightness Based Features for Multi-texture Classification”, Journal of ITEJ (the Institute of Image Information and Television Engineers, Japan), Vol. 56, No. 11, pp. 1769 -1778, 2002.
  • M. K. Bashar, S. Islam, and N. Ohnishi, “Image Texture Classification Using Cortex Transform: A Block Processing Approach (BPA)”, Journal of Engineering and Technology, Vol. 1, No.2, pp. 17 - 25, July-December, 2002.

Books/Book Chapters

1. M. K. Bashar, K. Mori, Y. Suenaga, T. Kitasaka and Y. Mekada, “Detecting Informative Frames  from Wireless Capsule Endoscopic Video using Color and Texture Features”, Lecture Notes in Computer Science (LNCS), Volume 5242/2008, Image Processing, Computer Vision, Pattern Recognition, and Graphics, pp. 603-610, Springer-Verlag, September 2008, ISBN-10: 3-540-85989-6

2. M. K. Bashar, N. Ohnishi,Image Retrieval by Local Contrast Patterns and Color”, Lecture Notes in Computer Science (LNCS), Volume 4292/2006, Advances in Visual Computing, pp. 136-145, November 2006, Springer-Verlag, ISBN-10: 3-540-48626-7

 

3. M. K. Bashar, N. Ohnishi, H. Kudo, T. Matsumoto, Y. Takeuchi, “Image Retrieval by   Categorization Using LVQ Network with Wavelet Domain Perceptual Features”, Lecture Notes in Computer Science (LNCS), Volume 3332/2005, Advances in Multimedia Information Processing, pp.188-196, December 2004, Springer-Verlag, ISBN-10: 3-540-23977-4

 

International Conferences
  1. M. K. Bashar, K. Komatsu, T. Fujimori, and T. Kobayashi, “Detecting Nuclei-centroids of Mouse Embryonic Cells from Fluorescence  Microscopy Images”, The 12th International Conference on Systems Biology (ICSB2011), pp.189-190, Mannheim, Germany, August 28-September 01, 2011
  2. M. K. Bashar, K. Komatsu, T. Fujimori, and T. J. Kobayashi, “Three dimensional cell nuclei extraction from fluorescence microscopy images using locally adaptive threshold”, The 6th International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB 2011), Heidelberg, Germany, September 02, 2011
  3. M. K. Bashar,  K. Mori, and T. J. Kobayashi, “Automatic Segmentation of Abdominal Blood Vessels from Contrasted X-ray CT Image”, IEEE/BUET International Conference on Electrical and Computer Engineering (ICECE 2010), pp. 187-190, December 18-20, 2010, Dhaka, Bangladesh.
  4. M. K. Bashar, K. Mori, Y. Suenaga, T. Kitasaka and Y. Mekada, “Stitching Capsule Endoscopic Images Using Phase Correlation”, Proc. International Forum on Medical Imaging in Asia (IFMIA 2009), pp.461-466, January 19-21, 2009, Taipei, Taiwan.
  5. M. K. Bashar, K. Mori, Y. Suenaga, T. Kitasaka and Y. Mekada, “Detecting Informative Frames from Wireless Capsule Endoscopic Video using Color and Texture Features”, Proc. 11th International Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), pp. 603-610, September 6-10, 2008, New York, USA.
  6. M. K. Bashar, K. Mori, Y. Suenaga, Y. Mekada, “Informative frame Detection from Wireless Capsule Video Endoscopic Images”, Proc. of the SPIE Medical Imaging Conference (SPIE MI 2008), February 16 -21, 2008, San Diego, USA.
  7. M. K. Bashar, K. Noda, N. Ohnishi, “Wavelet-based Multiresolution Features for Detecting Duplications in Images”,  Proceeding of the IAPR Int’l Conference on Machine Vision Application (MVA 2007), pp. 264-267,  May 16-18, 2007, Tokyo, Japan.
  8. M. K. Bashar, N. Ohnishi,Multiscale Contrast Patterns for Image Tamper Detection”, Proceedings of the International Conference  on Image and Vision Computing New Zealand (IVCNZ2006), pp.137-142, November 27-29, 2006, Great Barrier Island, New Zealand
  9. M. K. Bashar, N. Ohnishi,Image Retrieval by Local Contrast Patterns and Color”, Proceedings of the International Symposium on Visual Computing (ISVC 2006), pp. 136-145, November 6-8, 2006, Lake Tahoe, Nevada, USA
  10. M. K. Bashar, N. Ohnishi, K. Agusa, “Local Feature Saliency for Texture Representation”, Int’l Conference on Advances in Pattern Recognition (ICAPR 2005), LNCS 3687 (Pattern Recognition and Image Analysis), pp.570-579, August 22-25, 2005, UK. 
  11. M. K. Bashar, N. Ohnishi, H. Kudo, T. Matsumoto, Y. Takeuchi, “Image Retrieval by Categorization Using LVQ Network with Wavelet Domain Perceptual Features”, Proceedings of the 5th IEEE Pacific Rim Conference on Multimedia (PCM2004), pp.188-196, November 30 – December 3, 2004, Tokyo, Japan.
  12. M. K. Bashar, N. Ohnishi, K. Agusa, “Wavelet Intermittency Index based Saliency Measures for Texture Segmentation”, Proceedings of the 7th IAPR Int’l Conference on Pattern Recognition and Image Analysis (PRIA2004), Vol. I, pp. 164 -167, October 18 - 23, 2004, Saint Petersburg, Russia
  13. M. K. Bashar, T. Matsumoto, Y. Takeuchi, H. Kudo, and N. Ohnishi, “Unsupervised Texture Segmentation via Wavelet-based Locally Orderless Images”, Proceedings IASTED international conference on Computer Graphics and Imaging (CGIM 2003), pp. 279 - 283, August 13 - 15, 2003, Honolulu, USA.
  14. M. K. Bashar, T. Matsumoto, N. Ohnishi, “Texture Segmentation using Wavelet based Locally Orderless Images”, Proceedings of the 7th World Multi-conference on Systemics, Cybernetics, and Informatics (SCI2003), Vol. IV, pp. 298 - 304,  July 27 - 30,  2003, Florida, USA.
  15. M. K. Bashar, N. Ohnishi, “Comparison of Multi-channel Approaches for Texture Classification”, Proceedings of IEEE/BUET International Conference on Electrical and Computer Engineering (ICECE2002), pp.376 - 381, December 26-28, 2002, Dhaka, Bangladesh.
  16. M. K. Bashar, Y. Takeuchi, T. Matsumoto, H. Kudo, N. Ohnishi, “Blending Intensity-contrast and Transform features for Image Texture Classification”, Proceedings of the 2nd IASTED International conference on Visualization, Imaging and Image Processing (VIIP2002), pp. 46 - 51, September 9-12, 2002, Malaga, Spain.
  17. M. K. Bashar, N. Ohnishi, “A Block Processing Approach (BPA) to Texture Classification Using Cortex Transform”, Proceedings of the 2nd IAPR Int’l Workshop on Pattern Recognition for Remote Sensing (PRRS2002), pp. 82 - 89, August 16, 2002, Niagara Falls, Canada
  18. M. K. Bashar, and N. Ohnishi, “Fusing Cortex Transform and Intensity Based Features for Image Texture Classification”, Proceedings of the Fifth International Conference on Information Fusion (IFUS 2002), pp.1463 - 1469, July 8-11, 2002, Maryland, USA.
  19. M. K. Bashar, B. K. Mohan, R. K. Shevgaonkar, and N. Ohnishi, “Unsupervised Texture Classification of Images using Cortex Filters”, Proceedings of the 5th Asian Conference on Computer Vision (ACCV2002), Vol. II, pp. 828-833,  January 22 - 25, 2002,  Melbourne, Australia.
  20. M. K. Bashar, N. Ohnishi, R. K. Shevgaonkar, “Cortex Transform and its application for Supervised Texture Classification of Digital Images”, Proceedings of the SPIE 2001, Vol. 4567, pp. 141 - 152, October 29 – 30, 2001, Newton, USA.
  21. M. K. Bashar, N. Ohnishi, “Supervised classification of images A texture based approach”, Proceedings of the 5th World Multi-conference on Systemics, Cybernetics, and Informatics (SCI2001), Vol. VI, pp. 226 - 231, Orlando, Florida, July 22 - 25,  2001, USA.



Honors and Awards
  • Grants-In-Aid for Scientific Research (KAKENHI), Japan Society for the Promotion of Science (JSPS), Japan, April, 2006 ~ March, 2007.
  • Monbukagakusho Scholarship, Ministry of Education, Culture, Sports, Science and Technology, JAPAN, for Doctoral Program at Nagoya University, Higashiyama Campus , Japan, Oct. 2000 ~ March 2004.

  • Private Grant for Supporting Doctoral research, Hori Information Foundation, Nagoya, Japan, April, 2002 ~ March, 2003.
  • ICCR Scholarship, Government of INDIA, for Masters of Technology (M. Tech.) in Communication Engineering at Indian Institute of Technology Bombay, Powai, India, 1996~1998.

  • Biography is Selected for Who’sWho, Marquis Who’sWho in the World for 2008 Edition, NJ, USA, 2007.


 
Other Professional Activities:
   
Peer Reviewer of the following Journals

  • IEEE Transactions on Biomedical Engineering
  • IEEE Transaction on Sys Man Cybernetics-B
  • Pattern Recognition Letters
  • IEICE Transactions on Fundamentals

Membership in Technical Societies/Organizations

  •   Institute of Electrical and Electronics Engineer (IEEE)
  •   Institute of Electronics, Information, and Communication Engineers (IEICE)
  •   Institution of Engineers Bangladesh (IEB)
Other links
SiteLab1  SiteLab2 SiteLab3

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