Software

hiHMM: Bayesian non-parametric joint inference of chromatin state maps

Kyung-Ah Sohn*, Joshua W. K. Ho*, Djordje Djordjevic, Hyun-hwan Jeong, Peter J. Park^ and Ju Han Kim^

Download hiHMM

hiHMM is provided here as a Matlab release. The latest release is v1.00 (1/28/2015)

Here is a link to the published paper. Please cite this paper when using our method.

The paper

Here is a link to the EncodeX browser where you can download the normalized ChIP-Seq data that was used in our analysis, and much more!

We also provide the auxillary files you will need to recreate our analysis, including chromosome lengths and unmappable regions.

Download aux. files

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