Publications

See also Jeong-Mo's page on Google Scholar.

* indicates co-first authors and ^† indicates (co-)corresponding authors.

2021

• Microbially Guided Discovery and Biosynthesis of Biologically Active Natural Products

  • A Sarkar, EY Kim, T Jang, A Hongdusit, H Kim, JM Choi, JM Fox^†

  • ACS Synthetic Biology 10 (6): 1505-1519 (2021)

2020

• Client Proximity Enhancement inside Cellular Membrane-less Compartments Governed by Client-Compartment Interactions

  • D Song, Y Jo, JM Choi, Y Jung^†

  • Nature Communications 11: 5642 (2020)

• Multivalent-Interaction-Driven Assembly of Discrete, Flexible, and Asymmetric Supramolecular Protein Nano-Prisms

  • S Han*, Yn Kim*, G Jo, YE Kim, HM Kim, JM Choi,^† Y Jung^†

  • Angewandte Chemie International Edition 59 (51): 23244-23251 (2020)

• Generalized Models for Bond Percolation Transitions of Associative Polymers

  • JM Choi, AA Hyman, RV Pappu^†

  • Physical Review E 102: 042403 (2020)

• Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions

  • JM Choi, AS Holehouse, RV Pappu^†

  • Annual Review of Biophysics 49: 107-133 (2020)

  • - Highly Downloaded Articles in 2020: Physical Sciences

2019

• LASSI: A Lattice Model for Simulating Phase Transitions of Multivalent Proteins

  • JM Choi,* F Dar,* RV Pappu^†

  • PLOS Computational Biology 15 (10): e1007028 (2019)

• Covalently-Assembled Single-Chain Protein Nanostructures with Ultra-High Stability

  • W Bai, CJ Sargent, JM Choi, RV Pappu, F Zhang^†

  • Nature Communications 10: 3317 (2019)

• Improvements to the ABSINTH Forcefield for Proteins Based on Experimentally Derived Amino-Acid Specific Backbone Conformational Statistics

  • JM Choi, RV Pappu^†

  • Journal of Chemical Theory and Computation 15 (2): 1367-1382 (2019)

2018

• Experimentally Derived and Computationally Optimized Backbone Conformational Statistics for Blocked Amino Acids

  • JM Choi, RV Pappu^†

  • Journal of Chemical Theory and Computation 15 (2): 1355-1366 (2018)

• ProteomeVis: a Web App for Exploration of Protein Properties from Structure to Sequence Evolution across Organisms' Proteomes

  • RM Razban,* AI Gilson,* N Durfee,* H Strobelt, K Dinkla, JM Choi, H Pfister, EI Shakhnovich^†

  • Bioinformatics 34 (20): 3557-3565 (2018)

• Evolution on the Biophysical Fitness Landscape of an RNA Virus

  • A Rotem,* AWR Serohijos,* CB Chang, JT Wolfe, AE Fischer, TS Mehoke, H Zhang, Y Tao, WL Ung, JM Choi, JV Rodrigues, AO Kolawole, SA Koehler, S Wu, PM Thielen, N Cui, PA Demirev, NS Giacobbi, TR Julian, K Schwab, JS Lin, TJ Smith, JM Pipas, CE Wobus, AB Feldman, DA Weitz,^† EI Shakhnovich^†

  • Molecular Biology and Evolution 35 (10): 2390-2400 (2018)

• A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins

  • J Wang, JM Choi, AS Holehouse, HO Lee, X Zhang, M Jahnel, S Maharana, R Lemaitre, A Pozniakovsky, D Drechsel, I Poser, RV Pappu, S Alberti,^† AA Hyman^†

  • Cell 174 (3): 688-699 (2018)

• Measuring NDC80 Binding Reveals the Molecular Basis of Tension-Dependent Kinetochore-Microtubule Attachments

  • TY Yoo,^† JM Choi, W Conway, CH Yu, RV Pappu, DJ Needleman

  • eLife 7: e36392 (2018)

• Stability of the Influenza Virus Hemagglutinin Protein Correlates with Evolutionary Dynamics

  • EY Klein,*^† D Blumenkrantz,* A Serohijos, E Shakhnovich, JM Choi, JV Rodrigues, BD Smith, AP Lane, A Feldman, A Pekosz

  • mSphere 3: e00554-17 (2018)

2017

• The Role of Evolutionary Selection in the Dynamics of Protein Structure Evolution

  • AI Gilson, A Marshall-Christensen, JM Choi, EI Shakhnovich^†

  • Biophysical Journal 112 (7): 1350-1365 (2017)

• Graph's Topology and Free Energy of a Spin Model on the Graph

  • JM Choi,^† AI Gilson, EI Shakhnovich^†

  • Physical Review Letters 118: 088302 (2017)

2016

• Acetylation of Surface Lysine Groups of a Protein Alters the Organization and Composition of Its Crystal Contacts

  • K Kang,* JM Choi,* JM Fox, PW Snyder, DT Moustakas, GM Whitesides^†

  • The Journal of Physical Chemistry B 120 (27): 6461-6468 (2016)

• Evolutionary Dynamics of Viral Escape under Antibodies Stress: A Biophysical Model

  • N Chéron,* AWR Serohijos,* JM Choi, EI Shakhnovich^†

  • Protein Science 25 (7): 1332-1340 (2016)

2015

• Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria

  • S Bershtein,* AWR Serohijos,* S Bhattacharyya, M Manhart, JM Choi, W Mu, J Zhou, EI Shakhnovich^†

  • PLOS Genetics 11 (10): e1005612 (2015)

• Systems-Level Response to Point Mutations in a Core Metabolic Enzyme Modulates Genotype-Phenotype Relationship

  • S Bershtein,* JM Choi,* S Bhattacharyya, B Budnik, E Shakhnovich^†

  • Cell Reports 11 (4): 645-656 (2015)

• Minimalistic Predictor of Protein Binding Energy: Contribution of Solvation Factor to Protein Binding

  • JM Choi, AWR Serohijos, S Murphy, D Lucarelli, LL Lofranco, A Feldman, EI Shakhnovich^†

  • Biophysical Journal 108 (4): 795-798 (2015)

2014

• Evolution of Specificity in Protein-Protein Interactions

  • O Peleg, JM Choi, EI Shakhnovich^†

  • Biophysical Journal 107 (7): 1686-1696 (2014)

  • - Biophysical Journal Best of 2014

• Influenza A H1N1 Pandemic Strain Evolution – Divergence and the Potential for Antigenic Drift Variants

  • EY Klein,^† AWR Serohijos, JM Choi, EI Shakhnovich, A Pekosz

  • PLOS ONE 9 (4): e93632 (2014)

Before 2013

• Universal Correction of Density Functional Theory to Include London Dispersion (up to Lr, Element 103)

  • H Kim,* JM Choi,* WA Goddard^†

  • The Journal of Physical Chemistry Letters 3 (3): 360-363 (2012)

• State-Selective Predissociation Dynamics of Methylamines: The Vibronic and H/D Effects on the Conical Intersection Dynamics

  • DS Ahn, J Lee, JM Choi, KS Lee, SJ Baek, K Lee, KK Baeck, SK Kim^†

  • The Journal of Chemical Physics 128: 224305 (2008)