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Documentation

Related publication

Iglesias JE, Liu CY, Thompson P, Tu Z: "Robust Brain Extraction Across Datasets and Comparison with Publicly Available Methods", IEEE Transactions on Medical Imaging, 30(9), 2011, 1617-1634.


Usage

Using ROBEX is very simple, as it has no parameters. It recieves a volume as input and provides the stripped output. Optionally, it also provides the corresponding binary mask. The only catch is that the volume has to be in the same orientation as the provided reference volume. 
ROBEX works with any ITK-friendly format e.g. hdr/img, nii, dcm. Tha call is just:

LINUX:    runROBEX.sh inputFile strippedFile [outputMaskFile] 
WINDOWS:    runROBEX.bat inputFile strippedFile [outputMaskFile] 


License

ROBEX makes use of two different publicly available packages:
  • ITK: a framework for the development of segmentation and registration algorithms (Apache 2.0 license).
  • maxflow: a matlab port for the Boykov-Kolmogorov algorithm for solving the maximal flow problem (BSD license).


Here is the small print:


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* BSD License *
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Copyright (c) 2010 Juan Eugenio Iglesias
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