Publications

For a complete list of publications, please see my Google Scholar Profile

Journal Papers (Selected)

Pavlidis, S., Takahashi, K., Kwong, F., Xie, J., Hoda, U., Sun, K., Elyasigomari, V., Agapow, P., Loza, M., Baribaud, F., Chanez, P., Fowler, S., Shaw, DE., Fleming, LJ, Howarth, P., Sousa, A., Corfield, J., Auffray, C., De Meulder, B., Knowles, R., Sterk, P., Guo, Y., Adcock, I., Djukanovic, R. & Chung, KF. ‘T2-high’ in Severe Asthma Related to Blood Eosinophil, Exhaled Nitric Oxide and Serum Periostin. European Respiratory Journal, to appear.

Takahashi, K., Pavlidis, S., Kwong, F., Hoda, U., Rossios, C., Sun, K., Loza, M., Baribaud, F., Chanez, P., Fowler, S., Horvath, I., Montuschi, P., Singer, F., Musial, J., Dahlen, B., Dahlen, S.E., Krug, N., Sandstrom, T., Shaw, D., Lutter, R., Bakke, P., Fleming, L., Howarth, P., Caruso, M., Sousa, A., Corfield, J., Auffray, C., De Meulder, B., Lefaudeux, D., Djukanovic, R., Sterk, P., Guo, Y., Adcock, I. & Chung, KF. (2018). Sputum proteomics and airway cell transcripts of current and ex-smokers with severe asthma in U-BIOPRED: an exploratory analysis. European Respiratory Journal, 51(5), 1702173.

Rossios, C., Pavlidis, S., Hoda, U., Kuo, C., Wiegman, C., Russell, K., Sun, K., Loza, M., Baribaud, F., Durham, AL, Ojo, O., Lutter, R., Rowe, A., Bansal, A., Auffray C., Sousa, A., Corfield, J., Djukanovic, R., Guo, Y., Sterk, PJ., Chung, KF. & Adcock, I. (2017). Sputum transcriptomics reveal up-regulation of IL-1 receptor family members in severe asthma. Journal of Allergy and Clinical Immunology, 141(2), 560-570.

Wilson, S., Ward, J., Sousa, A., Corfield, J., Bansal, A., De Meulder, B., Lefaudeux, D., Auffray, C., Loza, M., Baribaud, F., Fitch, N., Sterk, P., Chung, KF., Gibeon, D., Sun, K., Guo, Y., Adcock, I., Djukanovic, R., Dahlén, B., Chanez, P., Shaw, D., Krug, N., Hohlfeld, J., Sandstrom, T. & Howarth, P. (2016). Severe asthma exists despite suppressed tissue inflammation: findings from the U-BIOPRED study. European Respiratory Journal, 48(5), 1307-1319.

Sun, K., Buchan, N., Larminie, C., & Pržulj, N. (2014). The integrated disease network. Integrative Biology, 6(11), 1069-1079.

Sun, K., Gonçalves, J. P., Larminie, C., & Pržulj, N. (2014). Predicting disease associations via biological network analysis. BMC Bioinformatics, 15(1), 1.

Hayes, W., Sun, K., & Pržulj, N. (2013). Graphlet-based measures are suitable for biological network comparison. Bioinformatics, 29(4), 483-491.


Conference Papers:

Oehmichen, A., Guitton, F., Sun, K., Grizet, J., Heinis, T. & Guo, Y. (2017). eTRIKS Analytical Environment: A Modular High-Performance Framework for Medical Data Analysis. In Proceeding of the 2017 IEEE International Conference on Big Data.

Liu, F., Oehmichen, A., Zhang, J., Sun, K., Dong, H., Mo, Y. & Guo, Y. (2017). TensorDB: Database Infrastructure for Continuous Machine Learning. In Proceeding of the 19th International Conference on Artificial Intelligence (ICAI'17).


Book Chapter:

Supratak, A., Wu, C., Dong, H., Sun, K., & Guo, Y. (2016). Survey on Feature Extraction and Applications of Biosignals. In Machine Learning for Health Informatics (pp. 161-182). Springer International Publishing.


Theses

Sun, K., Uncovering disease associations via biological network integration, PhD Thesis, Department of Computing, Imperial College London, 2014. Supervised by Dr. Natasa Przulj.

Sun, K., Organ Segmentation and Modelling from Whole Body MRI, MSc Thesis, Department of Computing, Imperial College London, 2010. Supervised by Prof. Guang-zhong Yang and Dr. Su-lin Lee.

Sun, K., FTRA - Face and Text Recognition Application, BEng Thesis, Department of Electrical, Electronic and Computer Engineering, University of Birmingham, 2009. Supervised by Dr. Mourad Oussalah.


Short Papers/Posters

Sun, K., Riley, J., Pavlidis, S., Hekking, P., Sterk, P., Adcock, I., Chung, KF. & Y. Guo. Understanding the Asthma and COPD Overlap (ACO): Comparison of Asthma-ACO and COPD-ACO Cohorts. The 2018 American Thoracic Society International Conference (ATS 2018), San Diego, US, May 2018.

Pavlidis, S., Guo, Y., Sun, K., Rossios, C., Rowe, A., Loza, M., Baribaud, F., Hoda, U., Sousa, A., Corfield, J., Djukanovic, R., Sterk, P., Adcock, I., Chung, KF. & Auffray C. (2017). Molecular evidence of Group 1 innate lymphoid cell activation in the U-BIOPRED cohort. European Respiratory Journal, 50(suppl 61), OA278.

Pavlidis, S., Guo, Y., Sun, K., Rossios, C., Rowe, A., Loza, M., Baribaud, F., Hoda, U., Sousa, A., Corfield, J., Djukanovic, R., Sterk, P., Adcock, I. & Chung, KF. (2017). Comparison Between Bronchial and Nasal Brushings Gene Expression in the U-BIOPRED Cohort. ADVANCES IN ASTHMA (pp. A4680-A4680). American Thoracic Society.

Pandis, I., Guo, Y., Guitton, F., Yang, X., Sun, K., Wang, S., Jullian, N., Sousa, A.R., Bansal, A., Corfield, J., Pavlidis, S., Hekking, P. W., Fleming, L. J., Shaw, D. E., Roberts, G., Fitch, N., Riley, J.H., Wagers, S.S., Rowe, A., Adcock, I.M., Chung, K.F., Auffray, C. & Sterk, P.J. (2015). eTRIKS IT platforms for large-scale biomedical research. European Respiratory Journal, 46(suppl 59), PA3976.

Hayes, W., Sun, K., & Pržulj, N., Graphlet-based measures are suitable for biological network comparison, Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2013, Berlin, Germany, July 2013.

Hayes, W., Sun, K., & Pržulj, N., On the suitability of Graphlet-based measures for biological network comparison, European Conference on Computational Biology (ECCB) 2012, Basel, Switzerland, September 2012.