Downloads

Depending upon your uses, data from GeoSymbio can be downloaded as a variety of different file types, including a Google Earth KML file, an ESRI shapefile, CSV files, and ITS2 sequence FASTA files.

If you download any of the following files or use any information from GeoSymbio, please cite:

    Franklin EC, Stat M, Pochon X, Putnam HM, Gates RD (2012) GeoSymbio: a hybrid, cloud-based web application
        of global geospatial bioinformatics and ecoinformatics forSymbiodinium–host symbioses. Molecular Ecology
        Resources
12:369-373. doi: 10.1111/j.1755-0998.2011.03081.x
.

Database Files

 To download the Database as a Google Earth KML file,
click the arrow below. 
To download the Schema as a .CSV file,
click the arrow below.
 To download the Database as an ESRI shapefile,
click the arrow below.

To download the Bibliography as a .CSV file,
click the arrow below.
  To download the Database as a .CSV file,
click the arrow below.

  To download the Manual as a .PDF file,
click the arrow below.



Sequence Files

There are two categories of sequence files, both are in FASTA format. The first category provides actual sequence alignments of all named ITS2 types. Distinct fasta alignment files were generated for each of the nine existing Symbiodinium clades (A through I). The second category groups all ITS2 types into a single fasta file (sequences are not aligned). This file can be used for local BLAST of private ITS2 sequence databases.

To download the aligned sequences for Clade A as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade F as a .fasta file,
click the arrow below.

To download the aligned sequences for Clade B as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade G as a .fasta file,
click the arrow below.
 
  To download the aligned sequences for Clade C as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade H as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade D as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade I as a .fasta file,
click the arrow below.
To download the aligned sequences for Clade E as a .fasta file,
click the arrow below.
To download the unaligned sequences for all Clades for local BLASTs as a .fasta file, click the arrow below.