Publications

The complete list of my publications, with citation statistics, up-to-date h-index etc. appears on Google Scholar


Selected journal publications 

Gambette P, van Iersel L, Jones M, Lafond M, Pardi F􏰀, Scornavacca C. Rearrangement Moves on Rooted Phylogenetic Networks PLoS Computational Biology 13(8): e1005611. (2017)  [pdf]

Gambette P, van Iersel L, Kelk S, Pardi F􏰀, Scornavacca C. Do branch lengths help to locate a tree in a phylogenetic network? Bulletin of Mathematical Biology 78: 1773-1795 (2016)

Binet M, Gascuel O, Scornavacca C, Douzery EJP, Pardi F. Fast and accurate branch lengths estimation for phylogenomic trees BMC Bioinformatics. 17:23 (2016)  [pdf]

Pardi F, Scornavacca C. Reconstructible phylogenetic networks: Do not distinguish the indistinguishable PLoS Computational Biology 11(4): e1004135 (2015) [pdf]

Pardi F, Gascuel O. Combinatorics of distance-based tree inference Proc Natl Acad Sci USA 109: 16443-16448 (2012) [pdf] 

Pardi F, Goldman N. Resource-aware taxon selection for maximizing phylogenetic diversity Systematic Biology 56: 431-444 (2007) [abstract] [pdf]

Pardi F, Goldman N. Species choice for comparative genomics: being greedy works PLoS Genetics 1: e71 (2005) [open access]


Book chapters 

Pardi F, Gascuel O. Distance-based methods in phylogenetics  In: Kliman R (editor) Encyclopedia of Evolutionary Biology, pp. 458-465, Elsevier (2016)

Gascuel O, Pardi F, Truszkowski J. Distance-based phylogeny reconstruction: safety and edge radius  In: Kao M-Y (editor) Encyclopedia of Algorithms, pp. 567-571, Springer (2016) [pdf]