FACILITIES‎ > ‎

BIOINFORMATICS


 https://sites.google.com/a/tnau.ac.in/plant-biotech/contact

https://sites.google.com/a/tnau.ac.in/dpmbb/research-activities

https://sites.google.com/a/tnau.ac.in/dpmbb/education

https://sites.google.com/a/tnau.ac.in/dpmbb/education

https://sites.google.com/a/tnau.ac.in/dpmbb/education

 https://sites.google.com/a/tnau.ac.in/plant-biotech/contact

INFRASTRUCTURE
  • Classrooms and computer lab and molecular biology laboratories with a total area of 15,000 sq.ft are made available for teaching and research.

  • 100 desktop computers (55 Nos of i5 desktop computers and 45 Intel Core i3) are used for bioinformatics teaching and training activities.

  • Browsing Center facility for all UG / PG students established with i5 desktop computers.

  • Molecular marker lab facility is available for students’ class and research work.

  • Fields comprising of wet lands, dry lands and garden lands are available for students to raise the crops for the research, demonstrations and class work.

     
     


COMPUTER AND COMMUNICATION FACILITIES

Servers
  • Dell PowerEdge T630server with 2 x Intel Xeon E5-2620V4 (2.1Ghz/8core/20MB/85W), 128GB DDR4 RAM is involved for bioinformatics pipelines of NGS data analysis.

  • Dell PowerEdge T630server with 2 x Intel Xeon E5-2620V4 (2.1Ghz/8core/20MB/85W), 32 GB DDR4 RAM is employed for bioinformatics pipelines of biomolecular simulations.

  • One Sun fire X2200M2 server (4+1 nodes), Server rack, 16 port switch.

  • One IBM server (Intel Pentium 4 processor, 3.20 Ghz, 1GB RAM, 160GB, 7200 RPM SATA hard disk drive) used for teaching and domain activities.

  • One IBM Server (IBM server system x 3400. Dual core Intel xeon processor, 2GB RAM, 667 MHZ FSb.) used for networking.

  • One Intel Xeon server with Geno cluster (Intel xeon NACONA processor @ 3.0 Ghz, 800MHZ FSB, 17” Samsung Dyna set flat clour monitor).

  • 40 Intel Core 2 Duo computers were connected to an IBM server is used for bioinformatics teaching and training activities.

Workstations
  • HP-Z840 High end workstation (2 x Intel Xeon E5-2600 V4 Series Processor with 22 core and 256 GB RAM with Linux operating system for running bioinformatics analysis pipeline).

Apple MAC Desktop
  • Apple Mac desktop computer - 3 Nos. (Two 2.4 GHz Quad core Intel Xeon “ west mere” processor, 1 TB Serial SATA, 7200 RPM hard disk drive ) and Apple Mac pro (Dual core, Intel xeon Processor, 7200 RPM HDD, 250 GB Serial SATA, 20” apple LCD display) used for molecular modeling and Docking studies.

Network Facility
  • 24 Mbps internet connectivity has been established exclusively at 24/7 for CPMB & B from BSNL - one to one exclusive connection.

  • Firewall - 1 GB RAM, Throughput of min. of 1.3 Gbps support, Min. Antivirus throughput 400 Mbps, IMIX throughput min. of 700 Mbps and support minimum 1,00,000 concurrent sessions.

  • Wi-Fi facility @ 24 Mbps for students and scholars at 24/7.

Other Facilities
  • Printing and Scanning facilities for students and faculties.

  • Multi-function printer EPSON-C869R is available to print the research articles and, education related documents and reports.

  • UPS (8+5+20 kVA) provides uninterrupted power supply to the user centre.         

 
 
                                      
                                          BTIS WEBSERVER

BIO-CLUSTER SERVERS WITH 5 NODES



HP - Z840 Highnd workstation
 (2 x Intel Xeon E5-2600 V4 Series Processor with 22 core and 256 GB RAM )

Wi-Fi @ 24 Mbps for students




SCIENTIFIC SOFTWARE PACKAGES

Name

Purpose

VLifeMDS

Molecular Modelling, docking and QSAR

CLC Genomics Workbench

NGS data analysis

Discovery studio software

protein modeling and simulations

Mapmaker/Mapmaker QTL

Linkage map construction and QTL analysis

Accelrys - Discovery Studio Visualization

Analysis and communication of modeling studies

IRRISTAT for windows

Statistical analysis of experimental data

BioSuite

Sequence analysis and molecular modeling

Genocluster (server edition with ten user license)

Sequence analysis

Windows 2003 server + twenty client license

For networking