Home RNAseq course CIAP-INTA Cordoba

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                Analyzing RNA-seq data

Hands-on course


         Organizers                                                                                                    Course Faculty

    Franco Fernández                                                                                             Máximo Rivarola 

    Humberto Debat                                                                                               Sergio Gonzalez

    

Venue


Centro de Investigaciones Agropecuarias (CIAP-INTA)
Av. 11 de septiembre 4755, Córdoba Capital.

Date:

29 Mayo al 1 de Junio 2018.     9 hs to 17 hs.


Course summary:

This course will cover data analysis of RNA-seq experiments combining lectures and practical exercises. The lectures will give insight into how biological knowledge can be generated from RNA-seq experiments and illustrate different ways of analyzing such data.

Practicals will consist of computer exercises that will enable the participants to apply methods to the analysis of RNA-seq data under the guidance of the lecturers and teaching assistants.

In more detail, the course will cover the following topics:

- de novo assembly,

- alignment, data handling and visualisation, data quality assessment,

- differential expression and statistical analysis, using Bowtie, Tophat and R/Bioconductor.


Course objectives

  • To develop participants’ familiarity with advanced RNA-seq data analysis methodologies

  • To provide participants with hands-on training on the latest analytical approaches and statistical analysis of RNA-seq data

Target Audience

This course is aimed at advanced PhD students, post-doctoral or early career researchers who are applying or planning to apply RNA sequencing and bioinformatics methods in their research. Familiarity with the technology and biological use cases of high throughput sequencing is preferred, as is some experience with R/Bioconductor.

The selecting committee will be looking at the overlap between the applicants expectations from the course and what the course will be delivering, coupled with the timely application for the candidates to use what they have learn as soon as possible.

Registration detail

An application is required, there are 25 places available. The courses fee is ARS 1000 / person

Suplies

Please bring a laptop (Mac OS X, Windows or Linux are all OK)


Contact

fernandez.franco@inta.gob.ar

 debat.humberto@inta.gob.ar


Google Drive folder with any other material:

https://drive.google.com/drive/folders/1_RXCU12_QtbHaEJLvnpfMZSCDoyRkMTl?usp=sharing


Some parts of tutorial/workshop is from the RNA seq course from:

Mar Gonzàlez-Porta (EMBL-European Bioinformatics Institute)

https://github.com/mgonzalezporta/TeachingMaterial

http://www.tgac.ac.uk/analysing-rna-seq-data/