(* corresponding author ; + equal contribution)

RESEARCH WORKS

Peer-reviewed papers published in international journals and books; types of paper (experimental and/or theoretical primary research papers, editorials, reviews, comments, meeting reports, correspondences) are indicated.

[For papers addressed to a more general audience, see at the end of this page.]




2016


[51] Lavelle, C.* (2016). Editorial. Frontiers in Life Sciences 9(2):1.
Editorial [pdf coming soon]


[50]
Cortini, R., Barbi, M., Caré, B., Lavelle, C., Lesne, A., Mozziconacci, J. and Victor, J.M.* (2015). The physics of epigenetics. Rev. Mod. Phys. 88:025002.
Theoretical paper   [PDF]


[49] Lavelle, C.*, Borghi, N. and Farge, E. (2015). Experimental approaches in mechanotransduction: from molecules to pathology. Methods 94:1-3.
Editorial   [PDF]


[48] Lavelle, C.* (2016). Editorial. Frontiers in Life Sciences 9(1):1.
Editorial
[PDF]



2015


[47] Lavelle, C.* (2015). Editorial. Frontiers in Life Sciences 8(4):1.
Editorial [PDF]


[46] Lavelle, C.* (2015). Editorial. Frontiers in Life Sciences 8(3):1.
Editorial
[PDF]

[45] Lavelle, C.* (2015). Editorial. Frontiers in Life Sciences 8(2):1-2.

Editorial [PDF]



[44] Jiang, K., Zhang, C., Guttula, D., Liu, F., van Kan, J., Lavelle, C., Kubiak, K., Malabirade, A., Lapp, A., Arluison, V. and van der Maarel, J.* (2015). Effects of Hfq on the conformation and compaction of DNA. Nucleic Acids Res 43(8):4332-41.

Experimental paper [PDF]


[43] Lavelle, C., Busi, F. and Arluison, V.* (2015). Multiple approaches for the investigation of bacterial small regulatory RNAs self-assembly. Methods Mol Biol 1297:21-42.

Book chapter [PDF]


[42] Lavelle, C.* (2015). Editorial. Frontiers in Life Sciences 8(1):1.

Editorial [PDF]


[41] Boulé, J.B., Mozziconacci, J. and Lavelle, C.* (2015). The polymorphism of the chromatin fiber. J Phys Cond Mat 27(3):033101.

Review [PDF]





2014

[40] Lavelle, C.* (2014). Pack, unpack, bend, twist, pull, push: the physical side of gene expression. Curr Opin Genet Dev 25:74-84.

Review [PDF]



[39] Lavelle, C.* and Foray, N. (2014). Chromatin structure and radiation-induced DNA damage: from structural biology to radiobiology. Int J Biochem Cell Biol 49:84-97.

Review [PDF]



[38] Huet, S., Lavelle, C., Ranchon, H., Carrivain, P., Victor, J.M. and Bancaud, A.* (2014). Relevance and limitations of crowding, fractal, and polymer models to describe nuclear architecture: is a unified picture out of reach? Int Rev Cell Mol Biol 307C:443-479.

Book chapter [PDF]

https://sites.google.com/site/christophelavelleteaching2/home/Illustration.JPG?attredirects=0




2013


[37] Lavelle, C.* (2013). Editorial. Frontiers in Life Sciences 7(3-4):89.

Editorial [PDF]


[36] Lavelle, C.* and Blossey, R. (2013). Epigenetic marks: from code to mechanisms. Frontiers in Life Sciences 7(1-2):1.

Editorial [PDF]

https://sites.google.com/site/christophelavelleteaching2/home/Cover.JPG?attredirects=0




2012

[35] Lease, R.+, Arluison, V.+ and Lavelle, C.* (2012). Twins, quadruplexes and more: functional aspects of native and engineered RNA self-assembly in vivo. Frontiers in Life Sciences 1-2:19-32.

Review [PDF]

https://sites.google.com/site/christophelavelle/publications/Lease%26al_figure_resume.jpg?attredirects=0




[34] Bancaud, A.*, Lavelle, C., Huet, S. and Ellenberg, J.* (2012). A fractal model for nuclear organization: current evidence and biological implications. Nucleic Acids Res 40(18):8783-8792.

Review [PDF]


[33] Carrivain, P., Cournac, A., Lavelle, C., Lesne, A., Mozziconacci, J., Paillusson, F., Signon, L., Victor, J.M. and Barbi, M.* (2012). Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective. Soft Matter 36(8):9285-9301.

Review [PDF]               (This paper made the cover)


[32] Barbi, M.*, Mozziconacci, J., Victor, J.M., Wong, H. and Lavelle, C. (2012). On the topology of chromatin fibers. Interface Focus 2(5):546-554. 

Theoretical paper [PDF]


[31] De Cian, A.+, Praly, E.+, Ding, F., Singh, V., Lavelle, C., Le Cam, E., Croquette, V., Bensimon, D. and Pietrement, O.* (2012). ATP independent cooperative binding of yeast Isw1a to bare and nucleosomal DNA. PLoS ONE 7(2):e31845.

Experimental paper [PDF]





2011

[30] Lavelle, C.*, Bancaud, A., Recouvreux, P., Barbi, M., Victor, J.M. And Viovy, J.L. (2011). Chromatin topological transitions. Prog Theor Phys 191:30-39.

Review [PDF]


[29] Lavelle, C.* and Blossey, R.* (2011). Nucleosome remodelling: why/when/how? FEBS J 278:3578.

 Editorial [PDF]                 (This paper made the cover)


[28] Lavelle, C.*, Praly, E., Bensimon, D., Le Cam, E., Croquette, V. (2011). Nucleosome remodelling machines and other molecular motors observed at the single molecule level. FEBS J 278:3596-607.

Review [PDF]



[27] Recouvreux, P., Lavelle, C., Barbi, M., Conde e Silva, N., Le Cam, E., Victor, J.M. and Viovy J.L.* (2011). Linker histone incorporation maintains chromatin fiber plasticity. Biophys J 100:2726-35.

Experimental paper [PDF]


[26] Geinguenaud, F., Calandrini, V., Cayrol, B., Teixeira, J., Mayer, C., Liquier, J., Lavelle, C. and Arluison, V.* (2011). Conformational transition of DNA bound to Hfq probed by infrared microscopy. Phys Chem Chem Phys 13:1222-29.

Experimental paper [PDF]






2010

[25] Lavelle, C.*, Victor, J.M. and Zlatanova, J.* (2010). Chromatin fiber dynamics under tension and torsion. Int J Mol Sci 11:1557-79.

Review [PDF]


[24] Heddi, B., Oguey, C., Lavelle, C., Foloppe, N. and Hartmann, B.* (2010). Intrinsic flexibility of B-DNA: the experimental TRX scale. Nucleic Acids Res 38:1034-47.

Theoretical paper  [PDF]





2009

[23] Lavelle, C.*, Recouvreux, P., Wong, H., Bancaud, A., Viovy, J.L., Prunell, A. and Victor, J.M.* (2009). Right-handed nucleosome: myth or reality? Cell 139:1216-7.

Correspondence [PDF]


[22] Lavelle, C.* (2009). Left is right, right is wrong. EMBO Rep 10:1185-6.

Comment [PDF]


[21] Fresnais, J., Lavelle, C. and Berret, J.F.* (2009). Nanoparticle aggregation controlled by desalting kinetics. J Phys Chem C 113:16371-79.

Experimental paper [PDF]


[20] Sivolob, A., Lavelle, C. and Prunell, A.* (2009). Flexibility of nucleosomes on topologically constrained DNA. In IMA volume 150 (eds. Benham, C.J., Harvey, S., Olson, W. and Sumners, D.W.), Springer-Verlag, pp251-292.  

Book chapter [PDF]


[19] Cayrol, B., Geinguenaud, F., Lacoste, J., Busi, F., Le Derout, J., Piétrement, O., Le Cam, E., Régnier, P., Lavelle, C.+ and Arluison, V.+,* (2009). Auto-assembly of E. Coli DsrA small noncoding RNA: molecular characteristics and functional consequences. RNA Biol 6:434-45.

Experimental paper [PDF]


[18] Lavelle, C.* and Buckle, M. (2009). Nucleic acids – proteins interactions: wedding for love or circumstances? Biochimie 91:943-50.

Meeting report [PDF]


[17] Revaud, D., Mozziconacci, J., Sabatier, L., Desmaze, C.+ and Lavelle, C.+,* (2009). Sequence-driven specific telomeric chromatin structure. Cell Cycle 8:1099-100. 

Experimental paper [PDF]               (This paper made the cover)


[16] Busi, F.+, Cayrol, B.+, Lavelle, C.+, Le Derout, J., Piétrement, O., Le Cam, E., Geinguenaud, F., Lacoste, J., Régnier, P. and Arluison, V.* (2009). Auto-assembly as a new regulatory mechanism of noncoding RNA. Cell Cycle 8:952-4.

Experimental paper [PDF]


[15] Mozziconacci, J. and Lavelle, C.* (2009). Chromatin fiber : 30 years of models. In Computational Biology: new insights (ed Russe, A.S.), Novascience, pp 147-164. 

Book chapter [PDF]


[14] Lavelle, C.* (2009). Force and torques in the nucleus: chromatin under mechanical constraints. Biochem Cell Biol 87:307-322. 

Review [PDF]





2008

[13] Dupaigne, P., Lavelle, C., Justome, A., Lafosse, S. Mirambeau, G., Lipinski, M., Piétrement, O.* and Le Cam, E.* (2008). Rad51 polymerization reveals a new remodeling mechanism. PLoS ONE 3(11):e3643.  

Experimental paper [PDF]


[12] Lavelle, C.*, Berry, H., Beslon, G., Ginelli, F., Giavitto, J.L., Kapoula, Z., Le Bivic, A., Peyrieras, N., Radulescu, O., Six, A., Thomas-Vaslin, V. and Bourgine, P. (2008). From molecules to organisms: towards multiscale integrated models of biological systems. Theor Biol Insights 1:13-22.

Review [PDF]


[11] Lavelle, C.* (2008). DNA torsional stress propagates through chromatin fiber and participates in transcriptional regulation. Nat Struct Mol Biol 15:123-5. 

Review [PDF]


[10] Lavelle, C.* Salles, B. and Wiesmuller, A. (2008). DNA repair, damage signalling and carcinogenesis. DNA Repair 7:670-680.

Meeting report [PDF]





2007

[9] Lavelle, C.* and Prunell, A. (2007). Chromatin polymorphism and the nucleosome superfamily. Cell Cycle 6:2113-9.

Review [PDF]


[8] Bancaud, A., Wagner, G., Conde e Silva, N., Lavelle, C., Wong, H., Mozziconacci, J., Barbi, M., Sivolob, A., Le Cam, E., Mouawad, L., Viovy, J.L., Victor J.M.* and Prunell, A.* (2007). Nucleosome chiral transition under positive torsional stress in single chromatin fibers. Mol Cell 27:135-47.

Experimental paper [PDF]          [press release (in french)]


[7] Lavelle, C.* (2007). Transcription elongation through a chromatin template. Biochimie 89: 516-527.

Review  [PDF]


[6] Lavelle, C.* and Sigal, A. (2007). Systems Biology Meets Chromatin Function. Chromosome Res 15: 247-256.


Meeting report [PDF]






2006


[5] Bancaud, A., Conde e Silva, N., Barbi, M., Wagner, G., Allemand, J.F., Mozziconacci, J., Lavelle, C., Croquette, V., Victor, J.M., Prunell, A.* and Viovy, J.L.* (2006). Structural plasticity of single chromatin fibers revealed by torsional manipulation. Nat Struct Mol Biol 13: 444-450.

Experimental paper [PDF] [press release (french)] [press release (english)]


[4] Lesne, A.*, Lavelle, C. and Benecke, A. (2006). Multi-scale vs function-dependent chromatin modelling. In Proceedings Modelling and Simulation of Biological Processes in the Context of Genomics, EDP Science, pp 59-70.

Proceedings  [PDF]


[3] Lavelle, C.* and Benecke, A.* (2006). Chromatin physics: replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent selfscaled model. Eur Phys J E 19: 379-384.

Theoretical paper  [PDF]


[2] Mozziconacci, J. Lavelle, C., Barbi, M., Lesne, A. and Victor, J.M.* (2006). A physical model for the condensation and decondensation of eukaryotic chromosomes. FEBS Lett 580: 368-72. 

Theoretical paper [PDF]





Before 2006...

[1] Sivolob, A., Lavelle, C. and Prunell, A.* (2003). Sequence-dependent nucleosome structural and dynamic polymorphism. Potential involvement of histone H2B N-terminal tail proximal domain. J Mol Biol 326:49-63. 

Experimental paper [PDF]




SCIENTIFIC WRITING

Scientific papers (peer-reviewed or not) mainly aimed at non-specialists.


For scientists

[2] Barbot, P., Gutrin, N., Martin, D. and Lavelle, C. (2014). De la Science à l'art culinaire. In Science Culinaire (ed Lavelle, C.), Belin pp 297-313. [In French]   
  [PDF]


[1]
Lavelle, C.*, Piétrement, O. and Le Cam, E. (2011). Molecular imaging of nucleoprotein complexes. Reflets de la Physique, 27:12-17.   [In French]    
 
[PDF]





For non-scientists


[24] Lavelle, C. (2015). Un petit verre de vin (chaud). Cuisine Collective, November 2015, p 44. [in French]
pdf to come

[23] Garnier, J. Rossi E. and Lavelle, C. (2015). Mini-bouchées aux fruits. Cuisine Collective, November 2015, p 53. [in French]
pdf to come

[22] Lavelle, C. (2015). (Trop) manger tue. Cuisine Collective, October 2015, p 28. [in French]

pdf to come

[21] Garnier, J. Rossi E. and Lavelle, C. (2015). Fromage de chèvre au miel, praline, gelée de thym. Cuisine Collective, October 2015, p 37. [in French]

pdf to come

[20]  Lavelle, C. (2015). Est-ce que j'ai l'air moléculaire? Cuisine Collective, September 2015, p 26. [in French]

pdf to come

[19] Garnier, J. Rossi E. and Lavelle, C. (2015). Quenelle printanière. Cuisine Collective, September 2015, p 38. [in French]
pdf to come

[18] Lavelle, C. (2015). Boire ou croquer, il faut choisir. Cuisine Collective, June 2015, p 24. [In French]

  Text online here.  (Or unformatted pdf available here)


[17] Garnier, J. Rossi E. and Lavelle, C. (2015). Brioche de Saint Génix. Cuisine Collective, June 2015, p 33. [In French]

    [PDF]


[16] Lavelle, C. (2015). En quête de sciensationnel. Cuisine Collective, May 2015, p 41. [In French]
  Text online here.  (Or unformatted pdf available here)


[15] Garnier, J. Rossi E. and Lavelle, C. (2015). La salade de tomate. Cuisine Collective, April 2015, p 28. [In French]

    [PDF]



[14] Lavelle, C. (2015). Innovation, piège à con. Cuisine Collective, April 2015, p 40. [In French]

  Text online here.  (Or unformatted pdf available here)



[13] Garnier, J. Rossi E. and Lavelle, C. (2015). La mousse d'avocat. Cuisine Collective, March 2015, p 33. [In French]
    [PDF]


[12] Lavelle, C. (2015). Respect du produit, oui - sanctification, non! Cuisine Collective, February 2015, p 18. [In French]

  Text online here.  (Or unformatted pdf available here)


[11] Garnier, J. Rossi E. and Lavelle, C. (2015). Le petit pois. Cuisine Collective, February 2015, p 29. [In French]
    [PDF]


[10] Lavelle, C. (2015). En route vers la "nouvelle nouvelle nouvelle" cuisine. Cuisine Collective, January 2015, p 49. [In French]

  Text online here. (Or unformatted pdf available here)


[9] Garnier, J. Rossi E. and Lavelle, C. (2015). Mousse de chocolat. Cuisine Collective, January 2015, p 64. [In French]

    [PDF]



[8] Garnier, J. Rossi E. and Lavelle, C. (2014). La salade de fruits. Cuisine Collective, December 2014, p25. [In French]  
       [PDF]


[7]
Garnier, J. Rossi E. and Lavelle, C. (2014). Jus de fruits frais. Cuisine Collective, November 2014, p47. [In French]
      
[PDF]


[6] Garnier, J. Rossi E. and Lavelle, C. (2014). Le rôti de veau. Cuisine Collective, October 2014, p46. [In French] 
  
  [PDF]


[5]
Garnier, J. Rossi E. and Lavelle, C. (2014). Compote de poire façon bourdaloue. Cuisine Collective, September 2014, p36. [In French] 
  
[PDF]


[4] Garnier, J. Rossi E. and Lavelle, C. (2014). Le pavé de saumon. Cuisine Collective, May 2014, p30. [In French]
    
[PDF]


[3]
Garnier, J. Rossi E. and Lavelle, C. (2014). La salade de carottes fraiches. Cuisine Collective, April 2014, p41. [In French]
    
[PDF]


[2]
Garnier, J. Rossi E. and Lavelle, C. (2014). Le pot au feu. Cuisine Collective, March 2014, p42. [In French] 
   
[PDF]


[1]
Lavelle, C. and Rhee J.A. (2009). Wine and makguli: fermentation stories. Donga Science, dec 2009, pp 38-43. [In Corean]
       
[PDF]


 

WEB CHRONICLES

Texts that are published online only.


Delicieuse physique (SFP, March 2015)




SCHOLARLY WRITING

Thesis and other dissertations.


[3] Lavelle, C. (201x?). HDR report.

[to be written...]


[2] Lavelle, C. (2002). Nucleosome structure and dynamics: influence of DNA sequence. PhD Thesis. [In French]

[PDF coming soon]


[1] Lavelle, C. (1999). Nucleosome structure and dynamics: influence of DNA sequence. Master degree report. [In French]

[PDF coming soon]