Portals and Genome Browsers

 

Model Organism Databases

 

Whole Genome Analyses

  • Biogrid. A curated set of physical and genetic interactions.
  • ChromatinDB, a web-based application that warehouses genome-wide microarray data mapping patterns of histone modifications and other chromatin features for the model organism Saccharomyces cerevisiae.
  • Chromatin Structure and Function Page. Information on chromatin biology, histones and epigenetics -- their impact on biological processes and the researchers that study them.
  • E-map. Epistatic-Mini Array Profiles (E-MAP) database.
  • iHOP, information hyperlinked over proteins
  • miRNA Research Education Centre, offers research synopses on an assortment of miRNA applications coupled with a comprehensive database of peer-reviewed publications.
  • Mitocheck, an integrated research project to study the regulation of mitosis in human cells. The project aims to test all human genes for involvement in mitosis by RNAi, then identify a subset which will be studied intensively for changes in phosphorylation, subcellular localization and involvement in protein complexes.
  • Pathway Interaction Database, an authoritative database for exploring signaling pathways.
  • Yeast interactome. A Physical Interactome Map of Saccharomyces Cerevisiae.

 

DNA Sequence Analysis

 

Protein Sequence Analysis

 

Multiple Alignment Tools

  • Clustal-W
  • PROMALS, constructs multiple protein sequence alignments using information from database searches and secondary structure prediction.
  • T-Coffee

 

DNA repair sites

 

Literature databases

 

Other sites of interest

 

Epigenetics: Basic Bibliography

 

More on Epigenetics