Publications


DBLP entry


2015


Journals

Jinhui Yao, Wei Tan, Surya Nepal, Shiping Chen, Jia Zhang, David De Roure, Carole A. Goble: ReputationNet: Reputation-Based Service Recommendation for e-Science. IEEE T. Services Computing 8(3): 439-452 (2015)

Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C.SEEK: a systems biology data and model management platform. BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186/s12918-015-0174-y.

Conferences

Kristian Garza, Carole A. Goble, John M. Brooke, Caroline Jay: Framing the community data system interface. BCS HCI 2015: 269-270

2014

Journals

Tim Clark, Paolo Ciccarese, Carole A. Goble: Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J. Biomedical Semantics 5: 28 (2014)

Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos: Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomedical Semantics 5: 41 (2014)

Sarah Cohen Boulakia, Jiuqiang Chen, Paolo Missier, Carole A. Goble, Alan R. Williams, Christine Froidevaux: Distilling structure in Taverna scientific workflows: a refactoring approach. BMC Bioinformatics 15(S-1): S12 (2014)

Judy Qiu, Ian T. Foster, Carole A. Goble: Emerging Computational Methods for the Life Sciences Workshop 2012. Concurrency and Computation: Practice and Experience 26(6): 1231-1233 (2014)

Daniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble: Common motifs in scientific workflows: An empirical analysis. Future Generation Comp. Syst. 36: 338-351 (2014)

Carole A. Goble: Better Software, Better Research. IEEE Internet Computing 18(5): 4-8 (2014)

Alasdair J. G. Gray, Paul T. Groth, Antonis Loizou, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, Chris T. A. Evelo, Carole A. Goble, Lee Harland, Steve Pettifer, Mark Thompson, Andra Waagmeester, Antony J. Williams: Applying linked data approaches to pharmacology: Architectural decisions and implementation. Semantic Web 5(2): 101-113 (2014)

Conferences

Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz: LabelFlow: Exploiting Workflow Provenance to Surface Scientific Data Provenance. IPAW 2014: 84-96

Shoaib Sufi, Neil Chue Hong, Simon Hettrick, Mario Antonioletti, Stephen Crouch, Alexander Hay, Devasena Inupakutika, Mike Jackson, Aleksandra Pawlik, Giacomo Peru, John Robinson, Les Carr, David De Roure, Carole A. Goble, Mark Parsons: Software in reproducible research: advice and best practice collected from experiences at the collaborations workshop. TRUST@PLDI 2014: 2:1-2:4

Carole A. Goble, Alasdair J. G. Gray, Eleftherios Tatakis: Help me describe my data: A demonstration of the Open PHACTS VoID Editor. International Semantic Web Conference (Posters & Demos) 2014: 29-32

Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. A. Evelo, Anna Gaulton, Carole A. Goble, Alasdair J. G. Gray, Paul T. Groth, Lee Harland, Karen Karapetyan, Antonis Loizou, John P. Overington, Steve Pettifer, Jon Steele, Robert Stevens, Valery Tkachenko, Andra Waagmeester, Antony J. Williams, Egon L. Willighagen: Scientific Lenses to Support Multiple Views over Linked Chemistry Data. Semantic Web Conference (1) 2014: 98-113

Jiuqiang Chen, Sarah Cohen Boulakia, Christine Froidevaux, Carole A. Goble, Paolo Missier, Alan R. Williams: DistillFlow: removing redundancy in scientific workflows. SSDBM 2014: 46:1-46:4

Matthew Gamble, Carole A. Goble: Influence Factor: Extending the PROV Model With a Quantitative Measure of Influence. TAPP 2014

Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul T. Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble: The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part I. Lecture Notes in Computer Science 8796, Springer 2014, ISBN 978-3-319-11963-2 [contents]

Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul T. Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble: The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part II. Lecture Notes in Computer Science 8797, Springer 2014, ISBN 978-3-319-11914-4

Khalid Belhajjame, Jun Zhao, Daniel Garijo, Kristina M. Hettne, Raúl Palma, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble: The Research Object Suite of Ontologies: Sharing and Exchanging Research Data and Methods on the Open Web. CoRR abs/1401.4307 (2014


2013

Journals

Gray AGJ, Groth P, Loizou A, Askjaer S, Brenninkmeijer C, Burger K, Chichester C, Evelo CT, Goble C, Harland L, Pettifer S, Thompson M, Waagmeester A,  Williams AJ Applying linked data approaches to pharmacology: Architectural decisions and implementation Semantic Web Journal in press

Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair JG Gray, Carole Goble and Tim Clark: PAV ontology: provenance, authoring and versioning, Journal of Biomedical Semantics 2013, 4:37  doi:10.1186/2041-1480-4-37 Published: 22 November 2013

Wolstencroft K, Goble C, Williams A, Haines R, Fellows D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Sufi S, Bhagat J, Hardisty A, Nieva de la Hidalga A, Fisher P, Withers D, Belhajjame K, Bacall F The Taverna Workflow Suite: Designing and Executing Workflows of Web Services on the Desktop, Web, or in the Cloud Nucleic Acid Research 2013 Jul; 41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2. (2013)

Katherine Wolstencroft, Stuart Owen, Matthew Horridge, Simon Jupp, Olga Krebs, Jacky L. Snoep, Franco du Preez, Wolfgang Mueller, Robert Stevens, Carole A. Goble: Stealthy annotation of experimental biology by spreadsheets. Concurrency and Computation: Practice and Experience 25(4): 467-480 (2013)

Sean Bechhofer, Iain E. Buchan, David De Roure, Paolo Missier, John D. Ainsworth, Jiten Bhagat, Philip A. Couch, Don Cruickshank, Mark Delderfield, Ian Dunlop, Matthew Gamble, Danius T. Michaelides, Stuart Owen, David R. Newman, Shoaib Sufi, Carole A. Goble: Why linked data is not enough for scientists. Future Generation Comp. Syst. 29(2): 599-611 (2013)

Conferences

Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz: Small Is Beautiful: Summarizing Scientific Workflows Using Semantic Annotations. BigData Congress 2013: 318-325

Pinar Alper, Khalid Belhajjame, Carole A. Goble, Pinar Karagoz: Enhancing and abstracting scientific workflow provenance for data publishing. EDBT/ICDT Workshops 2013: 313-318

Christian Y. A. Brenninkmeijer, Carole A. Goble, Alasdair J. G. Gray, Paul T. Groth, Antonis Loizou, Steve Pettifer: Including Co-referent URIs in a SPARQL Query. COLD 2013

Carole Goble, David De Roure, Sean Bechhofer, Accelerating Scientists’ Knowledge Turns Knowledge Discovery, Knowledge Engineering and Knowledge Management Communications in Computer and Information Science Volume 348,  pp 3-25 (2013) http://link.springer.com/chapter/10.1007%2F978-3-642-37186-8_1

Carole A. Goble, Alasdair J. G. Gray, Lee Harland, Karen Karapetyan, Antonis Loizou, Ivan Mikhailov, Yrjänä Rankka, Stefan Senger, Valery Tkachenko, Antony J. Williams, Egon L. Willighagen: Incorporating Commercial and Private Data into an Open Linked Data Platform for Drug Discovery. International Semantic Web Conference (2) 2013: 65-80

Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Mueller, Quyen Nguyen, Jacky L. Snoep, Carole A. Goble: Semantic Data and Models Sharing in Systems Biology: The Just Enough Results Model and the SEEK Platform. International Semantic Web Conference (2) 2013: 212-227

Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole A. Goble, Tim Clark: PAV ontology: Provenance, Authoring and Versioning. CoRR abs/1304.7224 (2013)

Tim Clark, Paolo Ciccarese, Carole A. Goble: Micropublications: a Semantic Model for Claims, Evidence, Arguments and Annotations in Biomedical Communications. CoRR abs/1305.3506 (2013)

Hyde Zhang, Stian Soiland-Reyes, Carole A. Goble: Taverna Mobile: Taverna workflows on Android. CoRR abs/1309.2787 (2013)


2012

Journals

Sansone S-A, Rocca-Serra P, Field D, ... Goble C, ... et al Toward interoperable bioscience data Nature Genetics 44:121–126  (2012) doi:10.1038/ng.1054

Karasavvas K, Wolstencroft K, Mina, Cruickshank D, Williams A, De Roure D, Goble C, Roos M Opening new gateways to workflows for Life Scientists. Studies in health technology and informatics 175, 131 (2012)

Frank van Harmelen, George Kampis, Katy Börner, Peter Van den Besselaar, Erik Schultes, Carole A. Goble, Paul T. Groth, Barend Mons, Stuart Anderson, Stefan Decker, Conor Hayes, Thierry Buecheler, Dirk Helbing: Theoretical And Technological Building Blocks For An Innovation Accelerator. Eur. Phys. J. Special Topics 214, 183–214 (2012) DOI: 10.1140/epjst/e2012-01692-1, http://arxiv.org/abs/1210.1480 (2012)


Conferences

Jinhui Yao, Wei Tan, Surya Nepal, Shiping Chen, Jia Zhang, David De Roure, Carole A. Goble: ReputationNet: A Reputation Engine to Enhance ServiceMap by Recommending Trusted Services. IEEE SCC 2012: 454-461

Matthew Gamble, Carole A. Goble, Graham Klyne, Jun Zhao: MIM: A Minimum Information Model vocabulary and framework for Scientific Linked Data. eScience 2012: 1-8

Daniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble: Common motifs in scientific workflows: An empirical analysis. eScience 2012: 1-8

Katherine Wolstencroft, Stuart Owen, Carole A. Goble, Quyen Nguyen, Olga Krebs, Wolfgang Müller: RightField: Semantic enrichment of Systems Biology data using spreadsheets. eScience 2012: 1-8

Jun Zhao, José Manuél Gómez-Pérez, Khalid Belhajjame, Graham Klyne, Esteban García-Cuesta, Aleix Garrido, Kristina M. Hettne, Marco Roos, David De Roure, Carole A. Goble: Why workflows break - Understanding and combating decay in Taverna workflows. eScience 2012: 1-9

Katy Wolstencroft, Stuart Owen, Matthew Horridge, Wolfgang Müller, Finn Bacall, Jacky L. Snoep, Franco du Preez, Quyen Nguyen, Olga Krebs, Carole A. Goble: RightField: Scientific Knowledge Acquisition by Stealth through Ontology-Enabled Spreadsheets. EKAW 2012: 438-441

Alasdair J. G. Gray, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, James Eales, Chris T. A. Evelo, Carole A. Goble, Paul T. Groth, Lee Harland, Antonis Loizou, Steve Pettifer, Rishi Ramgolam, Mark Thompson, Andra Waagmeester, Antony J. Williams: The Pharmacology Workspace: A Platform for Drug Discovery. ICBO 2012

Khalid Belhajjame, Paolo Missier, Carole A. Goble: Detecting Duplicate Records in Scientific Workflow Results. IPAW 2012: 126-138

Kristina M. Hettne, Katherine Wolstencroft, Khalid Belhajjame, Carole A. Goble, Eleni Mina, Harish Dharuri, David De Roure, Lourdes Verdes-Montenegro, Julián Garrido, Marco Roos: Best Practices for Workflow Design: How to Prevent Workflow Decay. SWAT4LS 2012

Carole A. Goble, Peter P. Chen, Jia Zhang (Eds.): 2012 IEEE 19th International Conference on Web Services, Honolulu, HI, USA, June 24-29, 2012. IEEE 2012, ISBN 978-1-4673-2131-0


2011

Journals

Katy Wolstencroft, Stuart Owen, Matthew Horridge, Olga Krebs, Wolfgang Müller, Jacky L. Snoep, Franco du Preez, Carole A. Goble: RightField: embedding ontology annotation in spreadsheets. Bioinformatics 27(14): 2021-2022 (2011)

Paolo Missier, Carole A. Goble: Workflows to open provenance graphs, round-trip. Future Generation Comp. Syst. 27(6): 812-819 (2011)

Jun Zhao, Satya Sanket Sahoo, Paolo Missier, Amit P. Sheth, Carole A. Goble: Extending Semantic Provenance into the Web of Data. IEEE Internet Computing 15(1): 40-48 (2011) doi: 10.1109/MIC.2011.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki: Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research 39(Database-Issue): 7-10 (2011) Print 2011. http://www.ncbi.nlm.nih.gov/pubmed/21205783


Conferences

Wei Tan, Jia Zhang, Ravi K. Madduri, Ian T. Foster, David De Roure, Carole A. Goble: ServiceMap: Providing Map and GPS Assistance to Service Composition in Bioinformatics. IEEE SCC 2011: 632-639

Khalid Belhajjame, Carole A. Goble, Stian Soiland-Reyes, David De Roure: Fostering Scientific Workflow Preservation through Discovery of Substitute Services. eScience 2011: 97-104

Carole A. Goble: Accelerating Scientists' Knowledge Turns. KDIR 2011: 7

David De Roure, Sean Bechhofer, Carole A. Goble, David R. Newman: Scientific Social Objects: The Social Objects and Multidimensional Network of the myExperiment Website. SocialCom/PASSAT 2011: 1398-1402



2010

Journal
Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA. BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Res. 2010 May 19. doi: 10.1093/nar/gkq394 [Epub ahead of print] featured paper

Goble, C.A., Bhagat, J., Aleksejevs, S., Cruickshank, D., Michaelides, D., Newman, D., Borkum, M., Bechhofer, S., Roos, M., Li, P., and De Roure, D.: myExperiment: a repository and social network for the sharing of bioinformatics workflows, Nucl. Acids Res., 2010. May 19. doi:10.1093/nar/gkq429 [Epub ahead of print]

De Roure D, Goble C, Aleksejevs S, Bechhofer S, Bhagat J, Cruickshank D, Fisher P, Hull D, Michaelides D, Newman D et. al., Towards Open Science: The myExperiment approach. Concurrency and Computation: Practice and Experience 2009, Accepted 31st March 2010

Swertz MA, van der Velde KJ, Tesson BM, Scheltema RA, Arends D, Vera G, Alberts R, Dijkstra M, Schofield P, Schughart K, Hancock JM, Smedley D, Wolstencroft K, Goble C, de Brock EO, Jones AR, Parkinson H, Casimir CO, Gen2phen GT, Jansen RC. XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biol. 2010 Mar 9;11(3):R27

Jacek Sroka, Jan Hidders, Paolo Missier, Carole Goble Formal semantics for the Taverna 2 Workflow Model Journal of Computer and System Sciences, Volume 76, Issue 6, September 2010, Pages 490-508

Conferences

Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Alexandra Nenadic, Ian Dunlop, Alan Williams, Tom Oinn and Carole Goble. Taverna, reloaded 22nd International Conference on Scientific and Statistical Database Management SSDBM Heidelberg, Germany, June 30 – July 2 2010 (short paper)

Paolo Missier, Katy Wolstencroft, Franck Tanoh, Peter Li, Sean Bechhofer, Khalid Belhajjame, Carole Goble Functional Units: Abstractions for Web Service Annotations Procs IEEE 2010 Fourth International Workshop on Scientific Workflows SWF 2010 (2010)

Paolo Missier, Satya S Sahoo, Jun Zhao, Amit Sheth, Carole Goble Janus: from Workflows to Semantic Provenance and Linked Open Data Procs IPAW 2010 (2010)

David De Roure, Carole Goble, Iain  Buchan, Anchors in Shifting Sand: the Primacy of Method in the Web of Data in Proc 2nd Conf on Web Science, Raleigh, Maryland, USA, April 2010.

Matthew Gamble and Carole Goble, Standing on the shoulders of the trusted web: Trust, Scholarship and Linked Data in Proc 2nd Conf on Web Science, Raleigh, Maryland, USA, April 2010.

Giuseppe Pirró, Paolo Trunfio, Domenico Talia, Paolo Missier, Carole Goble ERGOT: A Semantic-based System for Service Discovery in Distributed Infrastructures Procs. CCGRID '10 (2010), Melbourne, Australia.


2009

Journals

Wei Tan, Paolo Missier, Ian Foster, Ravi Madduri, David De Roure, Carole Goble (2009) A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid. In Concurrency and Computation Practice and Experience., Volume 22 Issue 9, Pages 1098 - 1117

Goderis, A., Fisher, P., Gibson, A., Tanoh, F., Wolstencroft, K., De Roure, D. and Goble, C. (2009) Benchmarking Workflow Discovery: A Case Study From Bioinformatics. Concurrency: Practice and Experience (Nov 2009) 21(16), pp2052 - 2069

Goderis A, Brooks C, Altintas I, Lee EA, Goble C Heterogeneous composition of models of computation Future Generation Computer Systems 25(5) (May 2009), pp 552-560

A. Gibson, M. Gamble, K. Wolstencroft, T. Oinn, C. Goble, K. Belajjame, Paolo Missier, The Data Playground: An Intuitive Workflow Specification Environment, Future Generation Computer Systems, Volume 25, Issue 4, April 2009, Pages 453-459

Goble C, Stevens R, Hull D, Wolstencroft K and Lopez R Data curation + process curation = data integration + science Briefings in Bioinformatics 2008 9(6):506-517; doi:10.1093/bib/bbn034

De Roure, D., Goble, C. and Stevens, R. (2009) The Design and Realisation of the myExperiment Virtual Research Environment for Social Sharing of Workflows. Future Generation Computer Systems, 25(5) pp. 561-567.

De Roure, D. and Goble, C. (2009) Software Design for Empowering Scientists. IEEE Software, 26 (1). pp. 88-95.

Conferences

Ketan Maheshwari, Paolo Missier, Carole Goble and Johan Montagnat. Medical Image Processing Workflow Support on the EGEE Grid with Taverna Proc CBMS 2009: IEEE Intl Conf on Computer-Based Medical Systems (CBMS), August 3-4 2009, Albuquerque, New Mexico, USA.

Iain Buchan, Shoaib Sufi, Ian Dunlop, Urara Hiroeh, Dexter Canoy, John Ainsworth, Angela Dale and Carole Goble Obesity e-Lab: Connecting social science via research objects, in Proc 5th International Conference on e-Social Science, 24-26 June 2009, Cologne, Germany

Yuwei Lin, Meik Poschen, Rob Procter, Carole Goble and Dave De Roure Issues for the sharing and re-use of scientific workflows in a social curation site in Proc 5th International Conference on e-Social Science, 24-26 June 2009, Cologne, Germany

Giuseppe Pirró, Paolo Missier, Paolo Trunfio, Domenico Talia, Gabriele Falace, Carole Goble Combining DHTs and SONs for Semantic-Based Service Discovery Procs International Conference on Intelligent System Design and Applications ISDA09 (2009)

Wei Tan, Kyle Chard, Dinanath Sulakhe, Ravi Madduri, Ian Foster, Stian Soiland-Reyes, Carole Goble. Scientific workflows as services in caGrid: a Taverna and gRAVI approach. 7th IEEE International Conference on Web Services (ICWS 2009), 6-10 July, 2009. Los Angeles, USA

De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Michaelides, D. and Newman, D. (2009) The myExperiment Open Repository for Scientific Workflows. In: Open Repositories 2009, May 2009, Atlanta, Georgia, US. May 18 21

De Roure D, Goble CA, Bhagat J, Cruickshank D, Goderis A, Michaelides D, Newman, D myExperiment: Defining the Social Virtual Research Environment Fourth IEEE International Conference on e-Science and Grid Computing, 2008. Indianapolis, USA 10-12 December 2008

Lin, Y., Poschen, M., Procter, R., Voss, A., Goble, C., Bhagat, J., De Roure, D., Cruickshank, D. and Rouncefield, M. (2008) Agile Management: Strategies for Developing a Social Networking Site for Scientists. In: 4th International Conference on e-Social Science, 18-20 June 2008, Manchester, UK

Paolo Missier, Khalid Belhajjame, Jun Zhao, Carole Goble, Data lineage model for Taverna workflows with lightweight annotation requirements, IPAW'08, Springer LNCS series, vol. 5272/2008, Salt Lake City, Utah, June 2008. DOI: http://dx.doi.org/10.1007/978-3-540-89965-5_4

2008


Journals

Peter Li , Juan I Castrillo , Giles Velarde , Ingo Wassink , Stian Soiland-Reyes,, Stuart Owen , David Withers, Tom Oinn , Matthew R Pocock , Carole A Goble, Stephen G Oliver and Douglas B Kell Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data BMC Bioinformatics 2008, 9:334 doi:10.1186/1471-2105-9-334 Highly Accessed Status

Saltz J, Hastings S, Langella S, Oster S, Kurc T, Payne P, Ferreira R, Plale B, Goble C, Ervin D, Sharma A, Pan T, Permar J, Brezany P, Siebenlist F, Madduri R, Foster I, Shanbhag K, Mead C, Chue Hong N. A roadmap for caGrid, an enterprise Grid architecture for biomedical research. Stud Health Technol Inform. 2008;138:224-37.

Belhajjame, K., Embury, S. M., Paton, N. W., Stevens, R., and Goble, C. A. 2008. Automatic annotation of Web services based on workflow definitions. ACM Trans. Web 2(2) (Apr. 2008), 1-34. DOI= http://doi.acm.org/10.1145/1346237.1346239

Aranguren, M., Wroe, C. Goble, C. & Stevens, R. (2008), In situ migration of handcrafted ontologies to reason-able forms, Data & Knowledge Engineering 66(1): 147-162

CA Goble and R Stevens, The State of the Nation in Data Integration in Bioinformatics, J Biomed Inform. 2008 Oct;41(5):687-93. (17 Google Scholar)

Alper P, Corcho O, Goble CA Understanding Semantic-Aware Grid Middleware for e-Science, Journal of Computing and Informatics. In press

A Goderis, P Li and CA Goble. Workflow discovery: requirements from escience and a graph-based solution. in International Journal of Web Services Research (JWSR) 5(4) October-December 2008, pp: 32-58

Jun Zhao, Carole Goble, Robert Stevens and Daniele Turi Mining Taverna’s Semantic Web of Provenance. Concurrency and Computation: Practice and Experience: Volume 20, Issue 5: 463 – 472 (2008)

2007

Journals

Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers Examining the Challenges of Scientific Workflows, IEEE Computer, vol.40,no.12,pp. 24-32,December,2007

Paolo Missier, Pinar Alper, Óscar Corcho, Ian Dunlop, Carole Goble, Requirements and Services for Metadata Management, IEEE Internet Computing, September/October 2007, Vol. 11, No. 5, special issue on Semantic-Web-Based Knowledge Management (SI eds John Davies, Miltiadis Lytras, Amit P. Sheth) pp: 17-25, ISSN: 1089-7801

Zhang, N., Yao, L., Nenadic, A., Chin, J., Goble, C., Rector, A., Chadwick, D., Otenko, S., and Shi, Q. 2007. Achieving fine-grained access control in virtual organizations: Concurrency and Computation: Practice and Experience 19, 9 (Jun. 2007), 1333-1352. DOI= http://dx.doi.org/10.1002/cpe.v19:9

R. Stevens, J. Zhao, and C. Goble Using provenance to manage knowledge of In Silico experiments Brief Bioinform, May 14, 2007; (2007) bbm015v1.

K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P.W. Lord, R.D. Stevens, C.A Goble, The myGrid Ontology: Bioinformatics Service Discovery, International Journal of Bioinformatics Research and Applications, Special Issue on Ontologies for Bioinformatics, Vol. 3, No. 3. (2007), pp. 303-325

Chen L., Shadbolt N.R., Goble C.A, A Semantic Web Based Approach to Knowledge Management for Grid, Applications, IEEE Transactions in Knowledge and Data Engineering, Special Issue: Semantic Web Era 19(2) pp. 283-296 February 2007 http://doi.ieeecomputersociety.org/10.1109/TKDE.2007.20

Chris Wroe, Carole Goble, Antoon Goderis, Phillip Lord, Simon Miles, Juri Papay, Pinar Alper, Luc Moreau Recycling workflows and services through discovery and reuse Concurrency and Computation: Practice and Experience 19(2) pp: 181 – 194, February 2007

Conferences

Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn and Carole Goble. The Data Playground: An Intuitive Workflow Specification Environment. e-Science 2007 - Third IEEE International Conference on e-Science and Grid Computing, 2007. Bangalore, India, 10-13 December 2007. Pages 59-66. BEST PAPER AWARD WINNER

Daniele Turi, Paolo Missier, Carole Goble, David De Roure and Tom Oinn. Taverna Workflows: Syntax and Semantics. e-Science 2007 - Third IEEE International Conference on e-Science and Grid Computing, 2007. Bangalore, India, 10-13 December 2007. Pages 441-448.

David De Roure, Carole Goble and Robert Stevens. Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows. e-Science 2007 - Third IEEE International Conference on e-Science and Grid Computing, 2007. Bangalore, India, 10-13 December 2007. Pages 603-610.

Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, Carole A. Goble, Wei Xing, Metadata Management in S-OGSA, International Conference on Computational Science, (2) 2007: 712-719

Antoon Goderis, Christopher Brooks, Ilkay Altintas, Edward A. Lee, Carole A. Goble: Composing Different Models of Computation in Kepler and Ptolemy II. International Conference on Computational Science (3) 2007: 182-190

Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, and Carole Goble. Grid Metadata Management: requirements and architecture. proceedings of 8th ACM/IEEE International Conference on Grid Computing (GRID 2007), Austin, Texas, September 2007.

Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, Carole Goble, and Wei Xing. Metadata Management in S-OGSA. In Jason J. Jung, Krzysztof Juszczyszyn, and Ngoc Thanh Nguyen, editors, International Workshop on Collective Intelligence for Semantic and Knowledge Grid (CISKGrid 2007), 2007.

Carole Goble and David De Roure myExperiment: Social Networking for Workflow-using e-Scientists in WORKS’07, June 25, 2007, Monterey, California, USA. ACM 978-1-59593-715-5/07/0006.

2006

Journals

L. Chen, N. R. Shadbolt, C. Goble, F. Tao, Managing Semantic Metadata for Web Grid Services, in International Journal of Web Services Research, 3(4), 73-94, October-December 2006

Tom Oinn, Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat and Chris Wroe Taverna: Lessons in creating a workflow environment for the life sciences in Concurrency and Computation: Practice and Experience 18(10) pp: 1067-1100, (Aug 2006).

Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole Goble, Matthew Pocock, Peter Li, Tom Oinn Taverna: a tool for building and running workflows of services in Nucleic Acids Research 34(Web Server issue):W729-W732; June 2006

Oscar Corcho, Pinar Alper, Ioannis Kotsiopoulos, Paolo Missier, Sean Bechhofer, Carole Goble S-OGSA: a Reference Semantic Grid Architecture in Elsevier Journal Web Semantics, Special Section on Semantic Grid: Semantic Grid --The Convergence of Technologies (guest eds York Sure and David De Roure) Volume 4, Issue 2, pp: 81-154 (June 2006)

Chen, L., Shadbolt N.R., Tao F. and Goble C., Engineering Grid Resources' Metadata for Resource and Knowledge Sharing. International Journal of Web Service Research. (4) pp. 73-94 (2006)

Conferences

Aleksandra Nenadic, Ning Zhang, Jay Chin, Carole Goble, FAME: Adding Multi-Level Authentication to Shibboleth, 2nd IEEE International Conference on e-Science and Grid Computing, Dec 4-6, 2006, Amsterdam, Netherlands.

Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton, Robert Stevens, and Carole A. Goble Automatic Annotation of Web Services Based on Workflow Definitions. Proc 5th International Semantic Web Conference, ISWC 2006 Athens, GA, USA, November 5-9, 2006. Proceedings LNCS 4273, p. 116-129

A. Goderis, P. Li, and C. Goble, Workflow discovery: the problem, a case study from e-Science and a graph-based solution, in Proc 4th IEEE Int. Conference on Web Services (ICWS 2006), Chicago, USA, 2006

Jun Zhao, Carole Goble, and Robert Stevens An Identity Crisis in the Life Sciences in 1st International Provenance and Annotation Workshop (IPAW'06), Chicago, May 2006; (Eds: Luc Moreau and Ian Foster) Springer LNCS 2006

Carole Goble, Oscar Corcho and Pinar Alper. e-Science and the Semantic Web: a Symbiotic Relationship . In Ninth International Conference on Discovery Science (DS-2006) Barcelona, Spain, 7-10 October 2006, Springer LNAI 4265 pp: 1-12 (2006)

Sean Bechhofer, Yeliz Yesilada, Bernard Horan and Carole Goble Knowledge-Driven Hyperlinks: Linking in the Wild in Proc of AH2006 4th Adaptive Hypermedia and Adaptive Web-Based Systems, 20-23 June 2006

2005

Journals

S. Harper, C. Goble, and R. Stevens. Augmenting the Mobility of Visually Impaired Web Travellers New Review of Hypermedia and Multimedia 11(1) (June 2005) pp: 103 – 128 (2005)

Zhang N, Rector A, Buchan I, Shi Q, Kalra D, Rogers J, Goble C, Walker S, Ingram D, Singleton P. A linkable identity privacy algorithm for HealthGrid. Stud Health Technol Inform. 2005;112:234-45.

Marta Sabou, Chris Wroe, Carole Goble, Heiner Stuckenschmidt Learning Domain Ontologies for Semantic Web Service Descriptions (2005) Journal of Web Semantics 3(4) Special Issue WWW2005 pp 340-365

S. Harper, Yeliz Yesilada, and Carole Goble Engineering accessible design': W4A 2005 workshop report, in SIGACCESS Access. Comput., (83):64-72, September 2005.

Aleksandra Nenadic, Ning Zhang, Barry Cheetham and Carole Goble Certified Delivery of E-goods Using Verifiable and Recoverable Signature Encryption in Journal of Universal Computer Science, 11(1): 175-192

Chen, L, Shadbolt, N, Goble, C, Tao, F, Puleston, C, and Cox, S.J., Semantics-Assisted Problem Solving on the Semantic Grid. Computational Intelligence, Vol.21, No.2, 2005, pp.157-176.

Conferences

Antoon Goderis, Carole Goble, Ulrike Sattler and Phillip Lord Seven Bottlenecks to Workflow Reuse and Repurposing, in 4th International Semantic Web Conference, Galway, Ireland, 7-10 November 2005 Springer: Lecture Notes in Computer Science, Vol.3729

Piero Fraternali, Peter Plessers, Sven Casteleyn, Yeliz Yesilada, Olga De Troyer, Robert Stevens, Simon Harper, Carole Goble, Accessibility: A Web Engineering Approach in Proc 14th Intl Conference on World Wide Web WWW2005, Chiba, Japan, May 2005

Marta Sabou, Chris Wroe, Carole Goble and Gilad Mishne Learning Domain Ontologies for Web Service Descriptions: an Experiment in Bioinformatics in Proc 14th Intl Conference on World Wide Web WWW2005, Chiba, Japan, May 2005 pp: 190 – 198 ACM Press New York, NY, USA Google Scholar 18 citations,

Kevin Garwood, Phillip Lord, Helen Parkinson, Norman W. Paton and Carole Goble Pedro Ontology Services: A framework for rapid ontology markup in Proc of 2nd European Semantic Web Conference, Crete, 29 May - 1 June 2005, Springer LNCS 3532 pp:578-591

Phillip Lord, Pinar Alper, Chris Wroe, and Carole Goble Feta: A light-weight architecture for user oriented semantic service discovery in Proc of 2nd European Semantic Web Conference, Crete, 29 May – 1 June 2005, Springer LNCS 3532 pp. 17-31

Carole Goble Putting Semantics into e-Science and Grids in Proc E-Science 2005, 1st IEEE Intl Conf on e-Science and Grid Technologies, Melbourne, Australia, 5-8 December 2005, (2005)

Carole Goble Using the Semantic Web for e-Science: inspiration, incubation, irritation in 4th International Semantic Web Conference, Galway, Ireland, 7-10 November 2005.

Carole Goble The Montagues and the Capulets Part 2 ACM Proceedings of the 3rd International conference on Knowledge capture, Banff, Alberta, Canada, 3-5 Oct 2005, pp: 199 - 200 2005 ISBN:1-59593-163-5.

2004

Journals

Wroe C, Goble CA, Greenwood M, Lord P, Miles S, Papay J, Payne T, Moreau L Automating Experiments Using Semantic Data on a Bioinformatics Grid in IEEE Intelligent Systems special issue on e-Science January/February 2004 (Vol. 19, No. 1) pp. 48-55

Bada M, Stevens R, Goble CA, Gil Y, Ashburner M, Blake JA, Cherry JM, Harris M, Lewis S, A Short Study on the Success of the Gene Ontology in Journal of Web Semantics, Elsevier Publishing, 1(2) 2004

Simon Harper, Carole Goble, and Steven Pettitt. proximity: Walking the link. Journal of Digital Information (JODI), 5(1), April 2004.

Carole Goble and Chris Wroe The Montagues and the Capulets, in Comparative and Functional Genomics December 2004, vol. 5, no. 8, pp. 618-622(5) (2004)


Conferences

Jun Zhao, Chris Wroe, Carole Goble, Robert Stevens, Dennis Quan, Mark Greenwood, Using Semantic Web Technologies for Representing e-Science Provenance in Proc 3rd International Semantic Web Conference ISWC2004, Hiroshima, Japan, 9-11 Nov 2004, Springer LNCS 3298: 92-106

Phillip Lord, Sean Bechhofer, Mark Wilkinson, Gary Schiltz, Damian Gessler, Carole Goble, Lincoln Stein, Duncan Hull. Applying semantic web services to bioinformatics: Experiences gained, lessons learnt. in Proc 3rd International Semantic Web Conference ISWC2004, Hiroshima, Japan, 9-11 Nov 2004 , Springer LNCS 3298 350-364

Yeliz Yesilada, Robert Stevens, Carole Goble, Shazad Hussein. Rendering Tables in Audio: The Interaction of Structure and Reading Styles in The Sixth International ACM SIGCAPH Conference on Assistive Technologies (ASSETS), Atlanta, USA, 2004.

Simon Harper, Carole Goble, Robert Stevens, and Yeliz Yesilada. Middleware to Expand Context and Preview in Hypertext In Proceedings of the ACM SIGACCESS Conference on Computers and Accessibility, pages 63-70. ACM Press, October 2004.

Robert Stevens, Hannah J Tipney, Chris Wroe, Tom Oinn, Martin Senger, Phillip Lord, Carole A Goble, Andy Brass and May Tassabehji Exploring Williams-Beuren Syndrome Using myGrid in. Bioinformatics 20:i303-310. Proc of 12th Intelligent Systems in Molecular Biology (ISMB), 31st Jul-4th Aug 2004, Glasgow, UK

Simon Harper, Yeliz Yesilada, Carole Goble, Robert Stevens. How Much is Too Much in Hypertext Links in the Fifteenth ACM Conference on Hypertext and Hypermedia, Santa Cruz, USA, 2004, pages 116-125. ACM Press, 2004

Chen L., Cox S.J., Tao F., Shadbolt N.R., Puleston C., Goble C. Empowering Resource Providers to Build the Semantic Grid Proceedings of the IEEE/WIC/ACM International Conference on Web Intelligence (WI’04) September 20-24, 2004, Beijing, China

Yeliz Yesilada, Simon Harper, Carole Goble, Robert Stevens. Screen Readers Cannot See (Ontology Based Semantic Annotation for Visually Impaired Web Travellers) in the International Conference on Web Engineering (ICWE), Munich, Germany, 2004 (LNCS 3140), pages 445-458. Springer, 2004.

Simon Harper, Stephen Pettitt, and Carole Goble. Proximity: Ad-hoc networks for enhanced mobility. In J. Klaus, K. Miesenberger, D. Burger, and W. Zagler, editors, Computers Helping People with Special Needs –Lecture Notes in Computer Science vol. 3118, pages 430–437, Paris, France, July 2004. 9th International Conference, ICCHP., Springer-Verlag.

Jun Zhao, Carole Goble, Robert Stevens and Sean Bechhofer. Semantically Linking and Browsing Provenance Logs for e-Science. In International Conference on Semantics of a Networked World Revised Selected papers, Springer LNCS 3226 pp 157-174, Paris, France, June 17 -19, 2004.

John Brooke, Donal Fellows, Kevin Garwood and Carole Goble, Semantic matching of Grid Resource Descriptions in Proceedings of Second European Across Grids Conference (AXGrids 2004), Nicosia, Cyprus, January 2004, M. D. Dikaiakos (Ed.), Springer LNCS 3165 pp 240-249

Carole Goble and David De Roure The Semantic Grid: Building Bridges and Busting Myths, 16th European conference on Artificial Intelligence ECAI 2004 including Prestigious Applicants of Intelligent Systems, PAIS IOS Press 2004, ISBN 1-58603-452-9, Valencia, Spain, 22-27 August 2004.

2003


Stevens R, Wroe C, Bechhofer S, Lord P., Rector A, and Goble C. Building Ontologies in DAML + OIL. Comparative and Functional Genomics, 4(1), 2003.

Wroe C., Stevens R.D., Goble C.A., Roberts A., Greenwood. M. A suite of DAML+OIL ontologies to describe bioinformatics web services and data. International Journal of Cooperative Information Systems. Special issue on Bioinformatics and Biological Data Management 12(2):197-224, 2003.

Lord P.W., Stevens R.D., Brass A. and Goble C.A. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics, 19(10):1275-83, 2003.

Harper S., Pettitt S, Goble C.A. Sentinel: Towards an Ambient Mobility Network, Journal of Disability and Rehabilitation. Aug 2003 25(16):940-8

Simon Harper, Carole Goble, and Robert Stevens. Traversing the web: Mobility heuristics for visually impaired surfers. In Tiziana Catarci, Missimo Mercella, John Mylopoulos, and Maria E. Orlowska, editors, Proceedings of the Fourth International Conference on Web Information Systems Engineering (WISE’03), pages 200–209, Los Alamitos California, USA, December (10–12) 2003. IEEE Computer Society.

Chen L, Shadbolt N.R, Goble CA., Tao F., Cox S.J., Puleston C., Smart P.R Towards a Knowledge-based Approach to Semantic Service Composition in 2nd International Semantic Web Conference, 20-24 October, 2003, Sanibel Island, Florida, USA, LNCS(2870): 319-334 GS:62

Harper S., Goble CA., and Pettitt S. Sentinel: Universal Access to Ambient Devices, in Proceedings of the 10th International Conference on Human-Computer Interaction. (2003)

Simon Harper, Carole Goble, and Steven Pettitt. Sentinel: Universal access to ambient devices. In C. Stephanidis, editor, Proceedings of the 10th International Conference on Human-Computer Interaction, volume 4, pages 399– 403, London, UK, 2003. Lawrence Erlbaum Associates.

Yeliz Yesilada, Simon Harper, Carole Goble and Robert Stevens. Ontology Based Semantic Annotation for Enhancing Mobility Support for Visually Impaired Web Users. In Proc. of the K-CAP 2003 Workshop on Knowledge Markup and Semantic Annotation, Florida, USA, 2003.

Stevens R, Robinson A, and Goble CA myGrid: Personalised Bioinformatics on the Information Grid in proceedings of 11th International Conference on Intelligent Systems in Molecular Biology, 29th June–3rd July 2003, Brisbane, Australia.

Yeliz Yesilada, Robert Stevens and Carole Goble. A Foundation for Tool Based Mobility Support for Visually Impaired Web Users In Proc. of the Twelfth International World Wide Web Conference (WWW 2003), Budapest, Hungary, 2003. Best Paper Finalist

Wroe C.J., Stevens R.D., Goble C.A., Ashburner M. A Methodology To Migrate The Gene Ontology To A Description Logic Environment Using DAML+OIL. Proceedings of the 8th Pacific Symposium on Biocomputing (PSB), Hawaii. January 2003.

Lord P.W., Stevens R.D., Brass A. and Goble C.A. Semantic similarity measures as tools for exploring the Gene Ontology Proceedings of the 8th Pacific Symposium on Biocomputing (PSB), Hawaii. January 2003 pages 601-612

Goble C.A. The Grid needs you! Enlist now ODBASE2003, 2nd International Conference on Ontologies, Databases and Applications of Semantics, 3-7 November 2003, Catania, Sicily (Italy)

Stevens R., Wroe C., Bechhofer S.K., Lord P., Rector A.L., and Goble C.A. Building ontologies in DAML + OIL. Comparative and Functional Genomics, 4(1), 2003.

2002


Stevens R, Goble C.A., Horrocks I, Bechhofer S. OILing the way to Machine Understandable Bioinformatics Resources. IEEE Information Technology in Biomedicine special issue on Bioinformatics. 6(2):129--134, June 2002.

Stevens R, Goble C.A., Horrocks I, Bechhofer S Building a Bioinformatics Ontology Using OIL IEEE Information Technology in Biomedicine special issue on Bioinformatics. 6(2):135--141, June 2002.

Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Matthew Addis, Nedim Alpdemir, Rich Cawley, David De Roure, Justin Ferris, Rob Gaizauskas, Kevin Glover, Chris Greenhalgh, Mark Greenwood, Peter Li, Xiaojian Liu, Phillip Lord, Michael Luck, Darren Marvin, Tom Oinn, Norman Paton, Stephen Pettifer, Milena V Radenkovic, Angus Roberts, Alan Robinson, Tom Rodden, Martin Senger, Nick Sharman, Robert Stevens, Brian Warboys, Paul Watson, and Chris Wroe. On the Use of Agents in a BioInformatics Grid. In Network Tools and Applications in Biology (NETTAB'2002) - Agents in Bioinformatics, Bologna, Italy, July 2002.

Chen L., Cox S., Goble, C.A., Keane A., Roberts A., Shadbolt N.R., Smart P., Tao, F, Engineering Knowledge for Engineering Grid Applications In proceedings EuroWeb 2002 The Web and the GRID: from e-science to e-business, Oxford, UK, December 17-18th 2002

Greenwood M, Wroe C, Stevens R.D., Goble C.A., Addis M. Position Paper: Are bioinformaticians doing e-Business? In proceedings EuroWeb 2002 The Web and the GRID: from e-science to e-business, Oxford, UK, December 17-18th 2002

Peim M, Franconi E, Paton N.W., Goble C.A., Query Processing with Description Logic Ontologies Over Object-Wrapped Databases, 14th International Conference on Scientific and Statistical Database Management, SSDBM 2002, 24th-26th July, 2002, Edinburgh, Scotland

Bechhofer S, Carr L., Goble C.A., Kampa S., Miles-Board T. The Semantics of Semantic Annotation. ODBASE2002: First International Conference on Ontologies, Databases, and Applications of Semantics for Large Scale Information Systems, Irvine, California. Springer-Verlag LNCS Vol. 2519, pp. 1151--1167. 2002

Goble C.A. The Semantic Web: A Killer App for AI? in The Tenth International Conference on Artificial Intelligence: Methodology, Systems, Applications (AIMSA 2002), Varna, Bulgaria, September 4-6, 2002 Lecture Notes in Computer Science 2443 Springer 2002, ISBN 3-540-44127-1 Pg: 274-278

2001

Simon Harper, Robert Stevens, and Carole Goble. Web mobility guidelines for visually impaired surfers. Journal of Research and Practice in Information Technology Special Issue on HCI (Australian Computer Society), 33(1):30–41, 2001.

Reich, J.R., Mitchell, A., Goble, C.A. and Attwood, T.K. Toward more intelligent annotation tools: a prototype. IEEE Intelligent Systems special issue on Intelligent Biology, 16(6), 42-51, 2001

Goble C.A., Stevens R., Ng G., Bechhofer S., Paton N.W., Baker P.G., Peim M., Brass A., Transparent Access to Multiple Bioinformatics Information Sources. IBM Systems Journal Special issue on deep computing for the life sciences, 40(2), 532-551, 2001.

Stevens R.D., Goble C.A., Baker P., and Brass A. A Classification of Tasks in Bioinformatics. Bioinformatics, 17(2):180-188, 2001.

Bechhofer S, Goble C.A. Thesaurus Construction through Knowledge Representation. Data and Knowledge Engineering, 37(1) pp 25--45, 2001.

Harper S., Stevens R.D., Goble C.A., 2000, Web Mobility Guidelines for Visually Impaired Surfers, Journal of Research and Practice in Information Technology Special Issue on HCI, 33(2), ed. Hammond J., May 2001, Australian Computer Society.

Stevens R.D., Horrocks I, Goble C.A., Bechhofer S Building a Reason-able Bioinformatics Ontology Using OIL. IJCAI'01 Workshop on Ontologies and Information Sharing, Seattle, USA, pp. 81--90, August 2001.

Bechhofer S., Horrocks I., Goble C.A., Stevens R.D. OilEd: a Reason-able Ontology Editor for the Semantic Web. Proceedings of KI2001, Joint German/Austrian conference on Artificial Intelligence, September 19-21, Vienna. Springer-Verlag LNAI Vol. 2174, pp 396--408. 2001.

Bechhofer S., Goble C.A. Towards Annotation using DAML+OIL. K-CAP 2001 Workshop on Knowledge Markup and Semantic Annotation, Victoria B.C, October 2001

Carr L., Bechhofer S., Goble C.A., Hall W. Conceptual Linking: Ontology-based Open Hypermedia. International World Wide Web Conference Proceedings of the 10th international conference on World Wide Web, Hong Kong, Hong Kong , pp: 334 – 342 (2001) ACM Press New York, NY, USA, ISBN:1-58113-348-0

Lord P.W., Reich J.R., Mitchell A., Stevens R.D., Attwood T.K. and. Goble C.A PRECIS: An automated pipeline for producing concise reports about proteins IEEE International Symposium on Bio-informatics and Biomedical engineering, Washington DC, November 2001. Pages 59-64. (Published by IEEE press, ISBN 0-7695-1423-5)

Harper S., Goble C.A., Stevens R.D., 2001, Prototype Mobility Tools for Visually Impaired Surfers, Proceedings of the 12th ACM Conference on Hypertext and Hypermedia 2001, Aarhus, Denmark, August 2001 Pages 33-34, ACM Press New York 2001

Goble C.A. The low down on e-science and grid for biology in Comparative and Functional Genomics 2(6) Dec 2001

2000

Stevens R.D., Bechhofer S., Goble C.A. Ontology-based Knowledge Representation for Bioinformatics. Briefings in Bioinformatics, 1(4), November 2000.

Paton, N.W., Khan, S.A., Hayes, A., Moussouni, F., Brass, A., Eilbeck, K., Goble, C.A., Hubbard, S. and Oliver, S.G., Conceptual Modelling of Genomic Information, Bioinformatics, 16(6):548-558, 2000

Paton N.W., Goble C.A., Bechhofer S. Knowledge Based Information Integration Systems. Information and Software Technology, 42(5):299--312, 2000.

Stevens R Baker P, Bechhofer S, Ng G, Jacoby A 1, Paton NW, Goble CA and Brass A, TAMBIS - Transparent Access to Multiple Bioinformatics Information Sources (2000) Bioinformatics 16(2) : 184-186 GS: 199, ISI: 96

Murray N., Paton N.W., Goble C.A. and Bryce J., Kaleidoquery: a flow-based visual language and its evaluation in: Journal of Visual Languages and Computing, Academic Press

Goble C., Harper S., Stevens R., 2000, The Travails of Visually Impaired Web Travellers, Proceedings of the 11th ACM Conference on Hypertext and Hypermedia 2000, Pg. 1 – 10, ACM Press New York 2000. Winner of the Doug Engelbart Award for Best Paper at ACM Hypertext 2000

Bullock J and Goble CA, Putting the Tourist into Tourist Information in Proceedings of ENTER 2000, 7th International Conference in Information and Communication Technologies in Tourism, 26-28 April 2000, Barcelona.

Goble C.A. What have the Romans (and Germans) ever done for us? or There are real applications for Description Logics some of which even take advantage of their reasoning services. Proceedings of the 2000 International Workshop on Description Logics (DL2000), Pg: 3-7, Aachen, Germany, August 17-August 19, 2000

1999-1991

Baker P.G., Goble C.A., Bechhofer S., Paton N.W., Stevens R. and Brass A. An Ontology for Bioinformatics Applications in Bioinformatics 15(6): 510-520, (1999).

Bechhofer S. and Goble C.A., Delivering terminological services, in Journal of the Italian Association for AI AI*IA Notizie, special issue on Description Logics for Engineering Applications 12(1): 27-32, (1999).

Murray N., Goble C.A. and Paton N.W., A Framework for Describing Visual Interfaces to Databases in: Journal of Visual Languages and Computing, Academic Press, 9(4): 429-456, (1998).

Rector A.L., Bechhofer S., Goble C.A., Horrocks I., Nowlan W.A., and Solomon W.D., The GRAIL Concept Modelling Language for Medical Terminology, in: Journal of Artificial Intelligence in Medicine, Kluwer Publishing, Vol 9, pp: 139-171, (1997).

Rector A.L., Nowlan W.A., Kay S., Goble C.A., and Howkins T.J. A Framework for Modelling the Electronic Medical Record. in: Methods of Information in Medicine, 2/93, Vol 32, FK Schattaeur Verlagsgesellschaft mbH publications, pp: 109-119, (1993).

O'Docherty M.H., Daskalakis C.N., Crowther P.J., Goble C.A. Ireton M.A., Oakley J., and Xydeas C.S., The Design and Implementation of a Multimedia Information System with Automatic Content Retrieval in: Information Services & Use, Vol 11, Elsevier Science Publishers, Netherlands pp: 345-385, (1991).

Comments