The files in the
Workflow Materials folder can be thought of a set of research objects that form a linear workflow (an over-simplification) of the process from original grant to a new hypothesis (contained in the READ ME file) to the application of software to generate data. These data were analyzed results presented and published and a press release generated from the work.
The challenge - what can you do to illustrate to us at the workshop that you have tools or ideas to make this process more efficient and the end product (paper, presentation etc.) more comprehensible to a broad audience.
I suggest you start with the readme file and then look at the introduction on the
website associated with the study. Contact me with any questions.
Phil Bourne pbourne@ucsd.edu
ć
BtPDF_GullyBurns_KEfEDDrugome.pptView Download
Gully Burns description of KEfED models of the drugome
5939k
v. 4
Jan 24, 2011, 8:08 PM
Gully Burns
ć
BtPDF-Intro-All-01-18-11-1715-gully-anita.pptxView Download
Introductory Presentations
5576k
v. 2
Jan 18, 2011, 10:12 PM
Philip Bourne
ć
BtPDF-Intro-All-01-19-11.pptxView Download
Latest version
4125k
v. 2
Jan 19, 2011, 7:30 AM
Gully Burns
ċ
BtPDF_Thompsonetal.pdfView Download
Comparing three annotation systems for identifying arguments in scientific text
1552k
v. 2
Jan 20, 2011, 5:38 AM
Anita de Waard
č
DesigningAnExperiment2.movDownload
Gully Burns: using the KEfED editor to design a simple experiment.
7067k
v. 2
Jan 20, 2011, 1:47 PM
Gully Burns
č
EnteringData3.movDownload
GullyBurns: entering data into a KEfED model
469k
v. 2
Jan 20, 2011, 1:47 PM
Gully Burns
ċ
HedgingBourne.pdfView Download
Anita de Waard - Talk on hedging in Bourne corpus
893k
v. 2
Jan 20, 2011, 5:37 AM
Anita de Waard
ć
NGP_Presentation__01_20_2011.pptxView Download
David Argue - Beyond the Dead Sea PDFs - A Next-Generation Paper Format
6339k
v. 2
Jan 24, 2011, 7:04 AM
Dave Argue
ć
Shotton&Peroni_Semantic_Annotation_Using_SPAR_Ontologies.pptView Download
David Shotton's presentation -Shotton&Peroni_Semantic_Annotation_Using_SPAR_Ontologies
3540k
v. 2
Jan 28, 2011, 10:36 AM
Jodi Schneider
ć
Solvitor-Annotum-BTP.pptView Download
Solvitor presentation on Annotum scholarly publishing system for Beyond The PDF - 20-Jan
3462k
v. 2
Jan 19, 2011, 11:23 PM
Carl Leubsdorf, Jr.
Ċ
supporting-reading-beyondthepdf.pdfView Download
Supporting Reading - Jodi Schneider (slides in PDF)
1966k
v. 2
Jan 28, 2011, 10:11 AM
Jodi Schneider
ć
totalimpact-beyondpdf2011.pptxView Download
Total Impact presentation
2617k
v. 2
Jan 19, 2011, 9:45 AM
Paul Groth
ĉ
Data.docView Download
Link to data associated with the study (148MB compressed).
26k
v. 3
Oct 28, 2010, 9:26 AM
Philip Bourne
ċ
Drugome-TB_v1.htmDownload
HTML version of an early draft of the paper
1304k
v. 2
Nov 24, 2010, 9:58 PM
Philip Bourne
ċ
EarlyDraft.zipView Download
Word, Excel files of an early draft of the paper.
1703k
v. 2
Nov 13, 2010, 11:53 AM
Philip Bourne
Ċ
FinalPaper.pdfView Download
Paper to be published by PLoS Comp. Biol.
4417k
v. 2
Oct 28, 2010, 7:52 AM
Philip Bourne
ĉ
PressRelease.docView Download
Press release associated with the paper.
29k
v. 2
Oct 28, 2010, 9:15 AM
Philip Bourne
ĉ
READMEFIRST.docView Download
Brief description of what is in the other files.
26k
v. 2
Oct 28, 2010, 7:47 AM
Philip Bourne
ĉ
site_research_plan_v14.docView Download
Original grant that funded the work.
4040k
v. 2
Oct 23, 2010, 4:12 PM
Philip Bourne
ĉ
Software.docView Download
Link to the software used to generate the data.
26k
v. 2
Oct 28, 2010, 9:08 AM
Philip Bourne
Ĉ
supporting_data.xlsView Download
Spreadsheet of data generated by the study.
625k
v. 2
Oct 28, 2010, 9:25 AM
Philip Bourne
ć
TBdrugomePresentation.pptView Download
Presentation of the research work.
6979k
v. 2
Oct 28, 2010, 7:44 AM
Philip Bourne
ċ
Xieetal..zipView Download
Intermediate versions of the paper after author, editor and copyeditor revisions.
9229k
v. 2
Nov 6, 2010, 12:42 PM
Philip Bourne
Breakout Sessions