RESOURCES

Interdisciplinary Computing and Complex Biosystems (ICOS) research group

The Synthetic Biology Open Language (SBOL)

The Standard European Vector Architecture (SEVA)

CellShape - Image Analysis Software

SynBioHub is a design repository

SEVAhub repository: access to SEVA-DB converted into SBOL

DiSCUS

The software DiSCUS (Discrete Simulation of Conjugation Using Springs) is designed to simulate bacterial growth and communication through horizontal gene transfer (conjugation). The software (v1 - released 2012) can be downloaded from here. DiSCUS paper, which explains parameters and dynamics can be found here. Demo videos:

DemoConjugation1.mov

SELECTED PRESENTATIONS