Publications

Full List of Publications

My PhD dissertation: 

• Bayesian Image Restoration and Bacteria Detection in Optical Endomicroscopy

• Supervisors: Prof. Stephen McLaughlin and Dr. Yoann Altmann

• Examiners: Prof. Tom Vercaurten (King's College London) and Dr. Joao Mota (Heriot-Watt University)

Submitted or in preparation: 

1. Ahmed Karam Eldaly, Matteo Figini, and Daniel C. Alexander, ''Alternative Learning Paradigms for Image Quality Transfer'' - Submitted

2. Ahmed Karam Eldaly, Matteo Figini, and Daniel C. Alexander,  ''Joint Magnetic Resonance Image Reconstruction and Uncertainty Quantification using a Bayesian Model'' - Submitted

3. Ahmed Karam Eldaly, Daniel C. Alexander, ''Joint Bayesian Image Reconstruction and Uncertainty Quantification using Log-convave Prior Models - An Application to Low-Field MRI'' - In preparartion.

Published or accepted for publication:

1. Ahmed Karam Eldaly, Daniel C. Alexander, ''Bayesian Magnetic Resonance Image Reconstruction and Uncertainty Quantification'' ISMRM & ISMRT, Singapore, May 2024.

2. Seunghoi Kim, Daniel C. Alexander, Ahmed Karam Eldaly, Matteo Figini, Henry F J Tregidgo, ''A 3D Conditional Diffusion Model for Image Quality Transfer - An Application to Low-Field MRI'' DGM4H,NeurIPS, 2023.

3. Ahmed Karam Eldaly and Ayman M. Khalifa. ''A General Framework for Hepatic Iron Overload Quantification using MRI''. Elsvier Digital Signal Processing, April 2023.

4. Ahmed Karam Eldaly, Ming Fing, Angela Di Fulvio, Mike Davies, Stephen McLaughlin, Yoann Altmann, and Yves Wiaux. "Bayesian Activity Estimation and Uncertainty Quantification of Spent Nuclear Fuel Using Passive Gamma Emission Tomography." Journal of Imaging 7.10 (2021): 212. 

5. Ahmed Karam Eldaly, Yoann Altmann, Ahsan Akram, Paul McCool, Antonios Perperidis, Kevin Dhaliwal, and Stephen McLaughlin ''Bayesian Bacterial Detection using Irregularly Sampled Optical Endomicroscopy Images'', Elsevier Medical Image Analysis, June 2019, pp 18-31.

6. Helen E. Parker, Antonios Perperidis, Ahmed Karam-Eldaly, Yoann Altmann, Kevin Dhaliwal, Robert R. Thomson, Stephen McLaughlin, and Michael G. Tanner "Characterising cross-coupling in coherent fibre bundles", Proc. SPIE 11076, Advances in Microscopic Imaging II, 110761D (22 July 2019);https://doi.org/10.1117/12.2527054 

7. Ahmed Karam Eldaly, Yoann Altmann, Ahsan Akram, Antonios Perperidis, Kevin Dhaliwal, and Stephen McLaughlin ''Patch-Based Sparse Representation for Bacterial Detection'', The International Symposium on Biomedical Imaging (ISBI), Viniece, Italy, PP 1-5, April 2019.

8. Savinien Bonheur, Ahmed Karam Eldaly, Jody Westerfeld, David Wilson, Kevin Dhaliwal, Stephen McLaughlin, Antonios Perperidis ''Segmentation and Quantification of Celleular Load Pulmonary Endomicroscopic Images Using Convolutional Neural Networks'', The International Symposium on Biomedical Imaging (ISBI), Viniece, Italy, PP 1-5, April 2019.

9. Ahmed Karam Eldaly, Yoann Altmann, Antonios Perperidis, and Stephen McLaughlin, ''Deconvolution of Irregularly Subsampled Images'',  IEEE Statistical Signal Processing Workshop, Freiburg, Germany, June 2018. (Matlab codes)

10. Ahmed Karam Eldaly, Yoann Altmann, Antonios Perperidis, Nikola Krstaji, Tushar R. Choudhary, Kevin Dhaliwal, and Stephen McLaughlin, "Deconvolution and Restoration of Optical Endomicroscopy Images'', IEEE Transactions on Computational Imaging, March 2017. (Matlab codes)

11. Antonios Perperidis, Helen Parker, Ahmed Karam Eldaly, Yoann Altmann, Kevin Dhaliwal, Robert Thomson, Michael G. Tanner, and Stephen McLaughlin, ''Characterisation and Modelling of Inter-Core Coupling in Coherent Fibre Bundles'', Journal-Optics Express, 2017.

12. El-Sayed H Ibrahim, Ayman M Khalifa, Ahmed Karam Eldaly, "The Influence of the Analysis Technique onEstimating Hepatic Iron Content Using Magnetic Resonance Imaging", Journal of Magnetic Resonance Imaging, May 2016 (Full Text).

13. El-Sayed H Ibrahim, Ayman M Khalifa, Ahmed Karam Eldaly, "MRI T2* Imaging for Assessment of Liver Iron Overload. Study of Different Data Analysis Approaches", Acta Radiologica, Feb 2016 (Full Text).

14. Ahmed Karam Eldaly, Yannick Benezeth, Virginie Flaus, Christian Duvillard, Alexis Bozorg Grayeli, Franck Marzani, "The Bag of Words Approach for the Classification of Head and Neck Cancers Using Diffuse Reflectance Spectroscopy", MICCAI workshop (Spectral Analysis in Medical Imaging), Oct 2015 (Full Text) (Presentation).

15. El-Sayed H Ibrahim, Ayman M Khalifa, Ahmed Karam Eldaly, "The Influence of the analysis technique on estimating liver iron overload using magnetic resonance imaging T2∗ quantification", Engineering in Medicine and Biology Society (EMBC), August 2014 36th Annual International Conference of the IEEE. (Full Text).

16. El-Sayed H Ibrahim, Ayman M Khalifa, Ahmed Karam Eldaly, Andrew W Bowman, "The effects of the analysis technique on hepatic iron evaluation using T2∗ mapping with magnetic resonance imaging", 2014 Middle East Conference on Biomedical Engineering (MECBME) February 17-20, 2014. (Full Text).