AWS ParallelCluster Benchmark

This page summarizes AWS ParallelCluster benchmark results for Relion 4.0.

<Environment>

AWS ParallelCluster : ver3.0.3
AWS Region: us-east-1
Relion : ver4.0-beta-2

Refine3D

<Analysis Data>

<Instance Type>

[A] g5-vcpu192-gpu8 (g5.48xlarge)

[B] g5-vcpu96-gpu4 (g5.24xlarge)

[C] g5-vcpu48-gpu4 (g5.12xlarge)

[D] g5-vcpu64-gpu1 (g5.16xlarge)

[E] g5-vcpu32-gpu1 (g5.8xlarge)

[F] g4dn-vcpu96-gpu8 (g4dn.metal)

[G] g4dn-vcpu48-gpu4 (g4dn.12xlarge)

[H] g4dn-vcpu32-gpu1 (g4dn.8xlarge)

[ I ] c6i-vcpu128-gpu0 (c6i.32xlarge)

[ J ] c6id-vcpu128-gpu0 (c6id.32xlarge)

[K] c5d-vcpu96-gpu0 (c5.24xlarge)

[L] g5g-vcpu64-gpu0 (g5g.16xlarge)

[M] g5g-vcpu32-gpu1 (g5g.8xlarge)

<Relion Compiler>

[01] GCC + IntelMPI

[02] Intel + IntelMPI (CPU compile)

[03] GCC + OpenMPI

Results

2. Total cost vs Process time

(Enlarged view near the origin)

3. Process time vs Number of GPUs

Class2D

<Analysis Data>

<Instance Type>

[A] g5-vcpu192-gpu8 (g5.48xlarge)

[B] g5-vcpu96-gpu4 (g5.24xlarge)

[C] g5-vcpu48-gpu4 (g5.12xlarge)

[D] g5-vcpu64-gpu1 (g5.16xlarge)

[E] g5-vcpu32-gpu1 (g5.8xlarge)

[F] g4dn-vcpu96-gpu8 (g4dn.metal)

[G] g4dn-vcpu48-gpu4 (g4dn.12xlarge)

[H] g4dn-vcpu32-gpu1 (g4dn.8xlarge)

[ I ] c6i-vcpu128-gpu0 (c6i.32xlarge)

[K] c5d-vcpu96-gpu0 (c5.24xlarge)

[L] g5g-vcpu64-gpu0 (g5g.16xlarge)

[M] g5g-vcpu32-gpu1 (g5g.8xlarge)

<Relion Compiler>

[01] GCC + IntelMPI

[02] Intel + IntelMPI (CPU compile)

[03] GCC + OpenMPI

Results

2. Total cost vs Process time

(Enlarged view near the origin)

3. Process time vs Number of GPUs

Calss3D

<Analysis Data>

<Instance Type>

[A] g5-vcpu192-gpu8 (g5.48xlarge)

[B] g5-vcpu96-gpu4 (g5.24xlarge)

[C] g5-vcpu48-gpu4 (g5.12xlarge)

[D] g5-vcpu64-gpu1 (g5.16xlarge)

[E] g5-vcpu32-gpu1 (g5.8xlarge)

[F] g4dn-vcpu96-gpu8 (g4dn.metal)

[G] g4dn-vcpu48-gpu4 (g4dn.12xlarge)

[H] g4dn-vcpu32-gpu1 (g4dn.8xlarge)

[ I ] c6i-vcpu128-gpu0 (c6i.32xlarge)

[ J ] c6id-vcpu128-gpu0 (c6id.32xlarge)

[K] c5d-vcpu96-gpu0 (c5.24xlarge)

[L] g5g-vcpu64-gpu0 (g5g.16xlarge)

[M] g5g-vcpu32-gpu1 (g5g.8xlarge)

<Relion Compiler>

[01] GCC + IntelMPI

[02] Intel + IntelMPI (CPU compile)

[03] GCC + OpenMPI

Results

2. Total cost vs Process time

Enlarged view near the origin

3. Process time vs Number of GPUs

Polish

<Analysis Data>

<Instance Type>

[A] c6i-vcpu128-gpu0 (c6i.32xlarge)

[B] c6id-vcpu128-gpu0 (c6id.32xlarge)

[C] c5d-vcpu96-gpu0 (c5d.24xlarge)

<Relion Compiler>

[01] Intel + IntelMPI (CPU compile)

[02] Intel + IntelMPI (GPU compile)

[03] GCC + IntelMPI

Results

2. Total cost vs Process time

3. Process time vs Number of cores

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