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Lab Details: SysBio Lab : https://sysbio.iiita.ac.in
We at Systems Biology Lab, Indian Institute of Information Technology-Allahabad, India are working on interdisciplinary studies focusing on understanding the complex interactions within biological systems. Our lab develops computational models and prediction systems to understand and simulate cellular metabolism processes.
More at >>> Pritish Varadwaj (researchgate.net)
Classes for Jan-June 2024
Next Generation Sequencing (Algorithms and Tools)
Subjects taught and mentored in earlier semesters :
Computer aided Drug Designing
Data and File structure
Cheminformatics
Molecular Structure Prediction and Visualization
Fundamental of Computer Programming
Advance Computer aided Drug Designing
Advance Molecular Structure Prediction and Visualization
Human Computer Interaction
Biological Databases and Tool
Artificial Intelligence
Introduction to Computer Programming
Bioinformatics
Principles Of Programming Language
Optimization Theory and Operational Research
Database Management System
Advance Bioinformatics
Lab Resources:
Our lab is currently equipped with a high-performance computing infrastructure along with a modest wet lab setup, to perform various systems biology studies with a collective goal to decipher the complexity and intricacy of nature.
The BigData Facility (DHYAN) has 20 CPU (800 cores) data node clusters with 8TB of RAM. The BigData Facility uses a parallel File System (~250TB) of DDN GRIDScaler storage at 15 GBps throughput over 100 Gbps interconnect network. – IIIT Allahabad Central Facility
Cloud Facility: The Cloud Facility has 6 cloud nodes (240 cores) with 2.3TB of RAM along with ~150TB of storage. The interconnect speed between nodes is 10Gbps and external connectivity is 10Gbps in Cloud Facility. The Cloud Facility supports Infrastructure as a Service (IaaS), Software as a Service (SaaS), Container as a Service (CaaS), and Virtual Machines containers (LXC, LXD, and Docker). – IIIT Allahabad Central Facility
Storage Server: NAS storage system with Xeon 8 Core 2.1 GHz with 8 x 7.68 TB SSD Drive along with 5 X 12 TB HDD
Computing Server: Tyrone 2 X AMD DDR4 SDRAM with ECC 2048 GB, AMD EPYC 7742, 64 cores, 02 nos. NVIDIA Tesla A100 40GB PCIe-based Accelerator, SATA SST 26880 GB
Streaming Server: Intel Xeon 8 core, 2.1 GHz, 64GB RAM, 1 TB SSD, and 5 TB HDD
Clients for development, and testing: 4 nodes with Intel Core i7 14, 32 GB, 1TB storage
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