Dr. Darrell Ricke has extensive experience in molecular biology, genomics, functional genomics, bioinformatics, computational biology, programming, and software engineering. Dr. Ricke has worked extensively in these areas in applications of understanding the mechanisms of human diseases, biology discovery, data integration, and data mining. His current research focuses on biomedical research with applications in designing medical countermeasures to viral, biotoxins, and bacterial pathogens, epigenetics, transcriptomics, metagenomics, and disease mutation analysis.
https://www.actox.org/am/am2021/plenary.asp
https://www.newspapers.com/image/785191470/?terms=%22darrell%20ricke%22&match=1
1996-02-05-the-albuquerque-tribune-pg-a2
1996-02-05-the-albuquerque-tribune-pg-a2-clip-genetics
Article
Full-text available
Nov 1999
The Bacillus anthracis Sterne plasmid pXO1 was sequenced by random, "shotgun" cloning. A circular sequence of 181,654 bp was generated. One hundred forty-three open reading frames (ORFs) were predicted using GeneMark and GeneMark.hmm, comprising only 61% (110,817 bp) of the pXO1 DNA sequence. The overall guanine-plus-cytosine content of the plasmid...
Aug 7, 2000 - The United States of America as represented by the Department of Health and Human Services
The invention provides the nucleic acid sequence encoding the protein associated with familial Mediterranean fever (FMF). The cDNA sequence is designated as MEFV. The invention is also directed towards fragments of the DNA sequence, as well as the corresponding sequence for the RNA transcript and fragments thereof. Another aspect of the invention provides the amino acid sequence for a protein (pyrin) associated with FMF. The invention is directed towards both the full length amino acid sequence, fusion proteins containing the amino acid sequence and fragments thereof. The invention is also directed towards mutants of the nucleic acid and amino acid sequences associated with FMF. In particular, the invention discloses three missense mutations, clustered in within about 40 to 50 amino acids, in the highly conserved rfp (B30.2) domain at the C-terminal of the protein. These mutants include M6801, M694V, K695R, and V726A. Additionally, the invention includes methods for diagnosing a patient at risk for having FMF and kits therefor.
https://patents.justia.com/patent/6627745
Patent History
Patent number: 6627745
Type: Grant
Filed: Aug 7, 2000
Date of Patent: Sep 30, 2003
Assignees: The United States of America as represented by the Department of Health and Human Services (Washington, DC), Cedars-Sinai Medical Center (Los Angeles, CA), University of California (Oakland, CA), University of Michigan (Ann Arbor, MI), Women's and Children's Hospital (North Adelaide), Heller Institute for Medical Research (Tel-Hashomer)
Inventors: Daniel L. Kastner (Bethesda, MD), Ivona Aksentijevichh (Bethesda, MD), Michael Centola (Tacoma Park, MD), Zuoming Deng (Gaithersburg, MD), Ramen Sood (Rockville, MD), Francis S. Collins (Rockville, MD), Trevor Blake(Laytonsville, MD), P. Paul Liu (Ellicott City, MD), Nathan Fischel-Ghodsian (Los Angeles, CA), Deborah L. Gumucio (Ann Arbor, MI), Robert I. Richards (North Adelaide), Darrell O. Ricke (San Diego, CA), Norman A. Doggett (Santa Cruz, NM), Mordechai Pras (Tel-Hashomer)
Primary Examiner: Gary Benzion
Assistant Examiner: Jeanine Goldberg
Attorney, Agent or Law Firm: Needle & Rosenberg, P.C.
Application Number: 09/486,147
https://www.sciencedirect.com/science/article/abs/pii/S1367593106000883?via%3Dihub
Downkload PDF at https://sci-hub.se/10.1016/j.cbpa.2006.06.024
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Darrell O Ricke, Shaowen Wang, Richard Cai, Dalia Cohen
Novartis Institutes for BioMedical Research, Inc., 250 Massachusetts Avenue, Cambridge, MA 02139, USA
Available online 5 July 2006.
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Considerable progress has been made in exploiting the enormous amount of genomic and genetic information for the identification of potential targets for drug discovery and development. New tools that incorporate pathway information have been developed for gene expression data mining to reflect differences in pathways in normal and disease states. In addition, forward and reverse genetics used in a high-throughput mode with full-length cDNA and RNAi libraries enable the direct identification of components of signaling pathways. The discovery of the regulatory function of microRNAs highlights the importance of continuing the investigation of the genome with sophisticated tools. Furthermore, epigenetic information including DNA methylation and histonemodifications that mediate important biological processes add to the possibilities to identify novel drug targets and patient populations that will benefit from new therapies
2018 MIT award
https://www.ll.mit.edu/news/2018-mit-lincoln-laboratory-technical-awards
Dr. Darrell O. Ricke, Tara L. Boettcher, Philip D. Fremont-Smith, Adam M. Michaleas, Dr. Martha S. Petrovick, Dr. Eric D. Schwoebel, and James G. Watkins
For the invention of Advanced DNA Forensics System, which is associated with 21 technology disclosures that were filed between 2013 and 2018.
The Advanced DNA Forensics System incorporates ultrafast computational methods for searching DNA databases and advanced forensics for complex DNA mixture analysis. This invention enables the rapid comparison of DNA samples from individuals and mixtures against a large DNA profile database and provides improved statistical confidence measures. The DNA forensics can be performed on a laptop for multiple military and criminal justice applications, has been transitioned to FBI Quantico R&D, and will continue to have an important and expanding impact on national security.
2019 (Sep) presentation
https://ieee-hpec.org/2019/2019Program/program_htm_files/04-66-2019IEEEHPECIdPrismtalk.pdf
04-66-2019IEEEHPECIdPrismtalk.pdf
ArticlePDF Available
January 2020
Authors:
RW Malone MD LLC
Download full-text PDFRead full-text
2023-04-13-researchgate-net-capture-340149846-medical-countermeasures-analysis-2019-ncov-and-vaccine-risks-for-antibody-dependent-enhancement-ade-img-1.jpg
2023-04-13-researchgate-net-capture-340149846-medical-countermeasures-analysis-2019-ncov-and-vaccine-risks-for-antibody-dependent-enhancement-ade.pdf
preprints202003-0138-v1x.pdf
THIS document is actually marked as March 8 2020 as last edit time ....
2023-04-15_20-44-18.jpg
SSRN.COm - Date is Mar 3 2020
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3546070
2023-04-15_20-39-37.jpg
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3546070
2020-03-03-papers-ssrn-com-sol3-papers-abstract-id-3546070.pdf
2020-03-03-papers-ssrn-com-sol3-papers-abstract-id-3546070-img-1.jpg
PDF paper : SSRN-id3546070.pdf
SSRN-id3546070-img-file-properties-hl-dates.jpg
DATA referenced ... https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XWVOA8
Preprints with The Lancet is part of SSRN´s First Look, a place where journals identify content of interest prior to publication. Authors have opted in at submission to The Lancet family of journals to post their preprints on Preprints with The Lancet. The usual SSRN checks and a Lancet-specific check for appropriateness and transparency have been applied. Preprints available here are not Lancet publications or necessarily under review with a Lancet journal. These preprints are early stage research papers that have not been peer-reviewed. The findings should not be used for clinical or public health decision making and should not be presented to a lay audience without highlighting that they are preliminary and have not been peer-reviewed. For more information on this collaboration, see the comments published in The Lancet about the trial period, and our decision to make this a permanent offering, or visit The Lancet´s FAQ page, and for any feedback please contact preprints@lancet.com.
26 Pages Posted: 3 Mar 2020
Massachusetts Institute of Technology (MIT) - Lincoln Laboratory
Alchem Laboratories
Background: In 80% of patients, COVID-19 presents as mild disease. 20% of cases develop severe (13%) or critical (6%) illness. More severe forms of COVID-19 present as clinical severe acute respiratory syndrome, T-predominant lymphopenia, high circulating levels of proinflammatory cytokines and chemokines, accumulation of macrophages and neutrophils in lungs, and immune dysregulation including immunosuppression.
Methods: All major SARS-CoV-2 proteins were characterized using an amino acid residue variation analysis method. Results predict that most SARS-CoV-2 proteins are evolutionary constrained, with the exception of the spike (S) protein extended outer surface. Results were interpreted based on known SARS-like coronavirus virology and pathophysiology, with a focus on medical countermeasure development implications.
Findings: Antibodies to variable S domains may enable an alternative infection pathway via Fc receptor-mediated uptake. This may be a gating event for the immune response dysregulation observed in more severe COVID-19 disease. Prior studies involving vaccine candidates for FCoV SARS-CoV-1 and Middle East Respiratory Syndrome coronavirus (MERS-CoV) demonstrate vaccination-induced antibody-dependent enhancement of disease (ADE), including infection of phagocytic antigen presenting cells (APC). T effector cells are believed to play an important role in controlling coronavirus infection; pan-T depletion is present in severe COVID-19 disease and may be accelerated by APC infection. Sequence and structural conservation of S suggests that SARS and MERS vaccine ADE risks may foreshadow SARS-CoV-2 vaccine risks. Autophagy inhibitors may reduce APC infection and T-cell depletion. Amino acid residue variation analysis identifies multiple constrained domains suitable as T cell vaccine targets. Evolutionary constraints on antiviral drug targets present in SARS-CoV-1 and SARS-CoV-2 may reduce risk of developing antiviral drug escape mutants.
Interpretation: Safety testing of COVID-19 S protein-based B cell vaccines in animal models is strongly encouraged prior to clinical trials to reduce risk of ADE upon virus exposure.
Funding Statement: U.S. Air Force Contract No. FA8702-15-D-0001.
Declaration of Interests: Dr. Ricke and Dr. Malone have nothing to disclose.
Ethics Approval Statement: Missing.
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Models for COVID-19 Early Cardiac Pathology Following SARS-CoV-2 Infection Maurice Fremont-Smith a , Nicole Gherlone b , Nora Smith c , Philip Tisdall d , Darrell O. Ricke c , ∗ a Frank H Netter MD School of Medicine – Quinnipiac University, USA b AMITA Health Saint Joseph Hospital Chicago, Chicago, IL 60657, USA c Massachusetts Institute of Technology, Lincoln Laboratory, Lexington, MA, 02420, USA d Medical School Companion LLC, FL, USA a r t i c l e i n f o Article history: Received 16 June 2021 Revised 1 September 2021 Accepted 22 September 2021
https://www.ijidonline.com/article/S1201-9712%2821%2900763-3/pdf
PIIS1201971221007633.pdf
September 2021
Authors:
RW Malone MD LLC
https://patents.justia.com/patent/20240207386
(note - similar filed in 2021 ... https://patents.justia.com/patent/20210379179 )
Mar 21, 2023
Provided herein are universal prophylactic compositions for preventing infection with influenza viruses by directing the immune response to highly conserved regions of the virus. Also provided are universal therapeutic compositions for treating influenza infection by targeting the highly conserved regions. Methods for using the prophylactic and therapeutic compositions are also provided.
Skip to: Description · Claims · Patent History · Patent History
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a divisional of U.S. application Ser. No. 17/186,851 filed Feb. 26, 2021, which claims the benefit of U.S. Provisional Patent Application Ser. No. 62/983,519, filed Feb. 28, 2020, each of which is incorporated herein by reference.
GOVERNMENT SUPPORT
This invention was made with Government support under Grant No. FA8702-15-D-0001 awarded by the U.S. Air Force. The Government has certain rights in the invention.
SEQUENCE LISTING STATEMENT
A computer readable form of the Sequence Listing is filed with this application by electronic submission and is incorporated into this application by reference in its entirety. The Sequence Listing is contained in the file created on Mar. 16, 2023 having the file name “21-0895-US-DIV.xml” and is 269,060 bytes in size.
BACKGROUND
Influenza viruses are members of the family Orthomyxoviridae and are divided into three genera: A, B, and C. Influenza A and B viruses cause respiratory infections in humans. Current vaccines are designed to induce immunity to hemagglutinin, one of two glycoproteins present on the surface of influenza viruses. Despite the availability of highly effective vaccines, influenza infection still results in up to 5,000,000 hospitalizations and 500,000 deaths annually worldwide. Currently available vaccines against influenza include up to four influenza hemagglutinin components intended to provide protection against H1N1, H3N2, and influenza B strains. Vaccine compositions are reassessed annually by the World Health Organization (WHO) to accommodate antigenic shift and drift in circulating virus strains. Such a strategy requires diligent surveillance of circulating influenza strains from year to year, and vaccine mismatches resulting from inaccurate predictions or unpredictable HA mutations arising during vaccine manufacture, which can result in increased morbidity and mortality even in vaccinated populations.
Given the shortcomings of the currently available vaccines, there remains a need for prophylactic and therapeutic compositions and methods that can be used to broadly target influenza in view of the high virus mutation rate amongst strains.
https://doi.org/10.36922/an.2258
Darrell O. Ricke1* , Jessica Rose2
1 Department of Research, Molecular BioInsights, Winchester, Massachusetts, United States of America
2 Independent Researcher, Ontario, Canada
Advanced Neurology 2024, 3(1), 2258 https://doi.org/10.36922/an.2258
Submitted: 16 November 2023 | Accepted: 15 February 2024 | Published: 12 March 2024
Abstract
...
4. Discussion
4.1. Neurological AEs post-vaccination
4.2. COVID-19 and influenza vaccines
4.3. Comparing normalized frequencies
4.4. Study limitations
5. Conclusion
Acknowledgements
Funding : None.
Conflict of interest : The author declares they have no competing interests.
Author contributions :
Conceptualization: Darrell O. Ricke
Investigation: Darrell O. Ricke
Methodology: Darrell O. Ricke
Formal analysis: Darrell O. Ricke
Visualization: Darrell O. Ricke
Writing – original draft: Darrell O. Ricke
Writing – review & editing: Darrell O. Ricke, Jessica Rose
2024-06-09-darrellricke-substack-com-autism-spectrum-disorder-and-infant.pdf
2024-06-09-darrellricke-substack-com-autism-spectrum-disorder-and-infant-img-1.jpg
Jun 09, 2024
Co-author: Dr. Jessica Rose , see: https://substack.com/@jessicar
Introduction
Observations
References