We are interested in understanding how plants defend themselves against pathogens. We study the HopZ family of type III effector proteins from Pseudomonas syringae and the immune responses they elicit in plant hosts. We use many different techniques to investigate plant immunity, including genetics, molecular biology, biochemistry, cell biology, genomics, high-throughput screens, and next-generation sequencing. Our long-term goals are to understand the molecular mechanisms of plant immunity, and to identify strategies for durable resistance in plants. We are a collaborative group of scientists who are committed to creativity, curiosity and excellence in science, training the next generation of scientists, and fostering a welcoming environment that values all people.
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The Lewis Lab is located at the Plant Gene Expression Center (PGEC) in Albany, California and is part of a unique collaboration between the Agricultural Research Service of the US Department of Agriculture and the Plant and Microbial Biology Department at the University of California, Berkeley.
Plant Gene Expression Center
800 Buchanan St.
Albany, CA 94710
jdlewis@berkeley.edu, jennifer.lewis@usda.gov
Lab Phone: 510.559.5964
Office Phone: 510.559.5909
Fax: 510.559.5678
Fresh from the Farm: A conversation with growers, connecting farmers with scientists. The lab visited Live Earth Farm to learn about their growing practices and learned how to make compost tea. See more Fresh from the Farm.
Congratulations to Louis Sharratt, Alisia Silva, and Rachelle Punsalan who graduated from UC Berkeley in June! Lou majored in Conservation and Resource Studies. Alisia majored in Molecular Environmental Biology. Rachelle majored in Microbial Biology and will be pursuing health fields.
Undergraduate student Rachelle Punsalan presented her research at the RCNR honors symposium! Rachelle examined early defense responses in different mutant lines to determine their role in plant immunity.
Dr. Yuan Chen is a new postdoc in the Lewis Lab. She joins us with experience in plant development.
Our collaborative paper with Bryan Swingle has been published at Frontiers in Microbiology! In collaboration with Bryan's lab at Cornell and Adam Deutschbauer's lab at LBNL, we identified new genes important for motility in Pseudomonas syringae using a random barcoded transposon library that our lab developed. Bacterial motility is important for virulence of plant pathogenic bacteria.
Our collaborative paper with Yasu Kadota and Ken Shirasu is now published at The Plant Cell! Using our high-throughput next-generation based yeast two-hybrid screen (QIS-Seq), we found that the Pseudomonas syringae effector HopF2 interacts with a pattern-recognition receptor QSK1. QSK1 is a negative regulator of basal defenses. By targeting QSK1, HopF2 promotes bacterial virulence.
Jana's first-author paper is published in Frontiers in Plant Science! Using a seedling-based screen that our lab developed, we identified complex resistance to Pseudomonas syringae in wild tomato. Previous graduate students Nate Diplock and Ilea Chau-ly, as well as previous undergrads Jamie, Liz, Steven and Taylor also contributed to the project. This project will help identify new sources of disease resistance in wild relatives of crop species.
Nate's first-author paper is published in Plant Physiology! Nate identified mutants in ZED1 that were able to recognize Pseudomonas syringae effector HopZ1a without triggering autoimmune responses. He showed that one ZED1 mutant could be coupled with tomato ZAR1 to enable effector recognition. Since ZAR1 is highly conserved in plants, this suggests effector recognition could be broadened to non-model species. Former postdoc Dr. Mael Baudin and former undergrad Derek Xiang also contributed to this project, along with our collaborators Dr. James Murphy, Dr. Isabelle Lucet and their lab members at the Walter and Eliza Hall Institute of Medical Research, Australia.
Nate Diplock has successfully finished his dissertation and is now Dr. Diplock! Nate's dissertation work focused on natural and engineered sources of resistance to Pseudomonas syringae. He will join BluumBio as a staff scientist to pursue biotechnological approaches to bioremediation.
Congratulations to Hope Cummings, Daniel Voronel, Gabriel Husain, Ivan Wang, and Jackie Fenner on obtaining their B.Sc. degrees! Hope majored in Genetics & Plant Biology and will be joining the Peace Corps. Daniel majored in Microbial Biology, and will be pursuing health fields. Gabriel majored in Conservation and Resource Studies. Ivan majored in Genetics & Plant Biology, and will be pursing a Master in Management at Cornell. Jackie majored in Genetics & Plant Biology, and will pursue plant biology research at UC Davis.