Supplementary Data

  • "Subacute Calorie Restriction and Rapamycin Distinctly Alter Homeostasis of the Mouse Liver Proteome and Partially Reverse the Effects of Aging" In preparation (2013) Raw Data
  • Hsieh, E.J., Shulman, N., Dao, D., Vincow, E., Pallanck, L., Rabinovitch, P.S., MacCoss, M.J. “Topograph, a Software Platform for Precursor Enrichment Corrected Global Protein Turnover” Molecular and Cellular Proteomics. In press (2012) Raw Data and Supplementary Figures
  • Dao-Fu, D., Hsieh, E.J., Chen, T., Menendez, L.G., Tsai, L., Beyer, R.P., Crispin, D.A., Szeto, H., Tian, R., MacCoss, M.J., Rabinovitch, P.S. "Global Proteomics and Pathway Analysis of Pressure-overload Induced Heart Failure and its Attenuation by Mitochondrial Targeted Peptides" Under review (2012) Supplementary Data
  • Finney,G.L., Blackler,A.R., Hoopmann,M.R., Canterbury,J.D., Wu,C.C., MacCoss,M.J., Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high resolution µLC-MS data, Anal. Chem. 80, 961-971 (2008) Supplementary Data
  • Merrihew,G.E., Davis,C., Ewing,B., Williams,G., Käll,L., Frewen,B.E., Noble,W.S., Green,P., Thomas,J.H., MacCoss,M.J., Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations, Genome Res., 18, 1660-1669 (2008)   Supplementary Data
  • Kline,K.G., Frewen,B., Bristow,M.R., MacCoss,M.J., Wu,C.C., High quality catalog of proteotypic peptides from human heart,  J. Proteome Res., 7, 5055-61 (2008) Supplementary Data
  • Aagaard, J.E., George, R.D., Fishman, L., MacCoss, M. J., and Swanson, W.J.  Selection on Plant Male Function Genes Identifies Candidates for Reproductive Isolation of Yellow Monkeyflowers in review. Supplementary Data 
  • Stergachis, A. B., MacLean, B., Lee, K., Stamatoyannopoulos, J. A., MacCoss, M. J. Rapid empirical discovery of optimal peptides for targeted proteomics, Nature Methods, 8, 1041-3 (2011) Supplementary Data

  • Schilling, B., Rardin, M.J., MacLean, B. X., Zawadzka, A. M., Frewen, B. E., Cusack, M. P., Sorensen, D. J., Bereman, M. S., Jing, E., Wu, C. C., Verdin, E., Kahn, C. R., MacCoss, M. J. and Gibson, B. W.  Platform independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline. Application to protein acetylation and phosphorylation, Mol. Cell. Proteomics, (2012) Supplementary Data