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Galaxy Update

posted Oct 29, 2012, 9:43 AM by James Johnson
MSI Galaxy has been updated to the Oct 23, 2012 Distribution.   Details for all recent updates are at:   

Among recent changes are improvements and additions to galaxy visualization:  

A few recent tools additions of note:

The tuxedo tools: bowtie, tophat, and cufflinks, are now available at version 2 

CummeRbund - provides visualizations for the results of Cuffdiff

MetaPhlAn - (Metagenomic Phylogenetic Analysis) is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.

SnpEffect - a variant annotation and effect prediction tool annotates and predicts the effects of variants on genes (such as amino acid changes).